Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0290

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0289 and Psyr_0290 are separated by 122 nucleotidesPsyr_0290 and Psyr_0291 are separated by 186 nucleotides Psyr_0289: Psyr_0289 - Radical SAM, at 307,483 to 308,541 _0289 Psyr_0290: Psyr_0290 - ThiJ/PfpI, at 308,664 to 309,332 _0290 Psyr_0291: Psyr_0291 - DedA, at 309,519 to 310,181 _0291 Position (kb) 308 309 310Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 307.772 kb on + strand, within Psyr_0289at 307.772 kb on + strand, within Psyr_0289at 307.773 kb on - strand, within Psyr_0289at 307.773 kb on - strand, within Psyr_0289at 307.773 kb on - strand, within Psyr_0289at 307.947 kb on + strand, within Psyr_0289at 307.947 kb on + strand, within Psyr_0289at 308.058 kb on + strand, within Psyr_0289at 308.089 kb on + strand, within Psyr_0289at 308.089 kb on + strand, within Psyr_0289at 308.089 kb on + strand, within Psyr_0289at 308.090 kb on - strand, within Psyr_0289at 308.279 kb on + strand, within Psyr_0289at 308.280 kb on - strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.306 kb on + strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.307 kb on - strand, within Psyr_0289at 308.508 kb on + strandat 308.508 kb on + strandat 308.508 kb on + strandat 308.509 kb on - strandat 308.549 kb on + strandat 308.549 kb on + strandat 308.550 kb on - strandat 308.557 kb on + strandat 308.570 kb on + strandat 308.575 kb on + strandat 308.582 kb on + strandat 308.582 kb on + strandat 308.583 kb on - strandat 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.755 kb on + strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.756 kb on - strand, within Psyr_0290at 308.896 kb on + strand, within Psyr_0290at 308.896 kb on + strand, within Psyr_0290at 308.896 kb on + strand, within Psyr_0290at 308.897 kb on - strand, within Psyr_0290at 309.290 kb on - strandat 309.312 kb on + strandat 309.312 kb on + strandat 309.313 kb on - strandat 309.374 kb on + strandat 309.375 kb on - strandat 309.521 kb on - strandat 309.709 kb on + strand, within Psyr_0291at 309.710 kb on - strand, within Psyr_0291at 309.758 kb on - strand, within Psyr_0291at 309.817 kb on + strand, within Psyr_0291at 309.817 kb on + strand, within Psyr_0291at 310.007 kb on - strand, within Psyr_0291at 310.007 kb on - strand, within Psyr_0291at 310.007 kb on - strand, within Psyr_0291at 310.027 kb on + strand, within Psyr_0291at 310.027 kb on + strand, within Psyr_0291at 310.027 kb on + strand, within Psyr_0291at 310.028 kb on - strand, within Psyr_0291at 310.028 kb on - strand, within Psyr_0291at 310.044 kb on + strand, within Psyr_0291at 310.073 kb on - strand, within Psyr_0291at 310.073 kb on - strand, within Psyr_0291at 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.246 kb on + strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.247 kb on - strandat 310.289 kb on - strandat 310.289 kb on - strandat 310.289 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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307,772 + Psyr_0289 0.27 -0.3
307,772 + Psyr_0289 0.27 -0.0
307,773 - Psyr_0289 0.27 +0.3
307,773 - Psyr_0289 0.27 +3.2
307,773 - Psyr_0289 0.27 +0.0
307,947 + Psyr_0289 0.44 -0.9
307,947 + Psyr_0289 0.44 -1.4
308,058 + Psyr_0289 0.54 +0.5
308,089 + Psyr_0289 0.57 +1.1
308,089 + Psyr_0289 0.57 +0.2
308,089 + Psyr_0289 0.57 -0.1
308,090 - Psyr_0289 0.57 +0.5
308,279 + Psyr_0289 0.75 +1.2
308,280 - Psyr_0289 0.75 -0.3
308,306 + Psyr_0289 0.78 +0.1
308,306 + Psyr_0289 0.78 +0.0
308,306 + Psyr_0289 0.78 +0.5
308,306 + Psyr_0289 0.78 +0.2
308,306 + Psyr_0289 0.78 +0.2
308,306 + Psyr_0289 0.78 +0.3
308,306 + Psyr_0289 0.78 +0.5
308,307 - Psyr_0289 0.78 -0.5
308,307 - Psyr_0289 0.78 +0.4
308,307 - Psyr_0289 0.78 +0.1
308,307 - Psyr_0289 0.78 -0.4
308,307 - Psyr_0289 0.78 -1.3
308,307 - Psyr_0289 0.78 +0.1
308,307 - Psyr_0289 0.78 +0.2
308,508 + -0.4
308,508 + -2.1
308,508 + +0.3
308,509 - -0.8
308,549 + -0.1
308,549 + -0.0
308,550 - +0.4
308,557 + -1.1
308,570 + +1.4
308,575 + -0.7
308,582 + -3.7
308,582 + -0.6
308,583 - -0.3
308,755 + Psyr_0290 0.14 -0.2
308,755 + Psyr_0290 0.14 -1.0
308,755 + Psyr_0290 0.14 -0.2
308,755 + Psyr_0290 0.14 -0.5
308,755 + Psyr_0290 0.14 -0.3
308,755 + Psyr_0290 0.14 -0.6
308,755 + Psyr_0290 0.14 -0.3
308,755 + Psyr_0290 0.14 -0.3
308,756 - Psyr_0290 0.14 -1.8
308,756 - Psyr_0290 0.14 -0.5
308,756 - Psyr_0290 0.14 -0.2
308,756 - Psyr_0290 0.14 -0.9
308,756 - Psyr_0290 0.14 +0.1
308,756 - Psyr_0290 0.14 +0.7
308,756 - Psyr_0290 0.14 -0.2
308,756 - Psyr_0290 0.14 +0.0
308,896 + Psyr_0290 0.35 -0.6
308,896 + Psyr_0290 0.35 +1.2
308,896 + Psyr_0290 0.35 +0.5
308,897 - Psyr_0290 0.35 +0.3
309,290 - -1.5
309,312 + +0.0
309,312 + -0.1
309,313 - +0.5
309,374 + -1.3
309,375 - -0.5
309,521 - -0.8
309,709 + Psyr_0291 0.29 -1.4
309,710 - Psyr_0291 0.29 -1.1
309,758 - Psyr_0291 0.36 -0.8
309,817 + Psyr_0291 0.45 -2.0
309,817 + Psyr_0291 0.45 -0.9
310,007 - Psyr_0291 0.74 -0.5
310,007 - Psyr_0291 0.74 -2.1
310,007 - Psyr_0291 0.74 +0.2
310,027 + Psyr_0291 0.77 -0.6
310,027 + Psyr_0291 0.77 +0.2
310,027 + Psyr_0291 0.77 -1.4
310,028 - Psyr_0291 0.77 +2.8
310,028 - Psyr_0291 0.77 -0.2
310,044 + Psyr_0291 0.79 +2.8
310,073 - Psyr_0291 0.84 -1.9
310,073 - Psyr_0291 0.84 +0.0
310,246 + -0.1
310,246 + -1.4
310,246 + +1.5
310,246 + -1.0
310,246 + -0.0
310,246 + +0.2
310,246 + -1.8
310,246 + -1.0
310,246 + -1.8
310,246 + -0.6
310,246 + +0.2
310,246 + -0.1
310,246 + -0.7
310,246 + -1.6
310,247 - +0.5
310,247 - +0.4
310,247 - -0.1
310,247 - -1.2
310,247 - -0.7
310,247 - -0.4
310,247 - -0.1
310,247 - -0.7
310,247 - -0.1
310,247 - -1.8
310,247 - -0.9
310,247 - -0.6
310,247 - -0.3
310,289 - -1.2
310,289 - -0.5
310,289 - +0.3

Or see this region's nucleotide sequence