Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS24165

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS24160 and RS_RS24165 are separated by 209 nucleotidesRS_RS24165 and RS_RS24170 are separated by 24 nucleotides RS_RS24160: RS_RS24160 - hypothetical protein, at 1,839,462 to 1,839,779 _RS24160 RS_RS24165: RS_RS24165 - TolC family protein, at 1,839,989 to 1,841,467 _RS24165 RS_RS24170: RS_RS24170 - ABC transporter ATP-binding protein, at 1,841,492 to 1,842,835 _RS24170 Position (kb) 1839 1840 1841 1842Strain fitness (log2 ratio) -2 -1 0 1 2at 1839.194 kb on + strandat 1839.194 kb on + strandat 1839.195 kb on - strandat 1839.318 kb on + strandat 1839.467 kb on + strandat 1839.467 kb on + strandat 1839.467 kb on + strandat 1839.467 kb on + strandat 1839.468 kb on - strandat 1839.585 kb on + strand, within RS_RS24160at 1839.586 kb on - strand, within RS_RS24160at 1839.887 kb on - strandat 1839.961 kb on - strandat 1840.322 kb on + strand, within RS_RS24165at 1840.322 kb on + strand, within RS_RS24165at 1840.323 kb on - strand, within RS_RS24165at 1840.548 kb on - strand, within RS_RS24165at 1840.548 kb on - strand, within RS_RS24165at 1840.775 kb on + strand, within RS_RS24165at 1840.830 kb on - strand, within RS_RS24165at 1841.693 kb on - strand, within RS_RS24170at 1841.882 kb on + strand, within RS_RS24170at 1842.204 kb on - strand, within RS_RS24170

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,839,194 + -0.4
1,839,194 + +1.8
1,839,195 - -0.1
1,839,318 + -2.7
1,839,467 + -0.2
1,839,467 + +0.4
1,839,467 + +0.6
1,839,467 + -0.1
1,839,468 - -0.9
1,839,585 + RS_RS24160 0.39 +0.4
1,839,586 - RS_RS24160 0.39 -2.3
1,839,887 - -1.0
1,839,961 - -0.6
1,840,322 + RS_RS24165 0.23 -0.4
1,840,322 + RS_RS24165 0.23 -0.0
1,840,323 - RS_RS24165 0.23 +1.0
1,840,548 - RS_RS24165 0.38 -0.3
1,840,548 - RS_RS24165 0.38 +0.4
1,840,775 + RS_RS24165 0.53 -0.4
1,840,830 - RS_RS24165 0.57 -0.0
1,841,693 - RS_RS24170 0.15 +0.6
1,841,882 + RS_RS24170 0.29 -0.7
1,842,204 - RS_RS24170 0.53 -0.3

Or see this region's nucleotide sequence