Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04540 and RS_RS04545 are separated by 26 nucleotides RS_RS04545 and RS_RS04550 overlap by 4 nucleotides RS_RS04550 and RS_RS04555 are separated by 129 nucleotides RS_RS04555 and RS_RS04560 are separated by 103 nucleotides
RS_RS04540: RS_RS04540 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 964,601 to 965,974
_RS04540
RS_RS04545: RS_RS04545 - D-glycero-beta-D-manno-heptose-7-phosphate kinase, at 966,001 to 966,948
_RS04545
RS_RS04550: RS_RS04550 - ADP-L-glycero-D-mannoheptose-6-epimerase, at 966,945 to 967,940
_RS04550
RS_RS04555: RS_RS04555 - competence protein ComEA, at 968,070 to 968,387
_RS04555
RS_RS04560: RS_RS04560 - cysteine synthase CysM, at 968,491 to 969,393
_RS04560
Position (kb) 966
967
968 Strain fitness (log2 ratio) -2
-1
0
1
2 at 966.863 kb on - strand at 967.230 kb on + strand, within RS_RS04550 at 967.359 kb on + strand, within RS_RS04550 at 967.360 kb on - strand, within RS_RS04550 at 967.360 kb on - strand at 967.441 kb on - strand, within RS_RS04550 at 967.965 kb on - strand at 968.005 kb on + strand at 968.239 kb on - strand, within RS_RS04555 at 968.239 kb on - strand, within RS_RS04555 at 968.239 kb on - strand, within RS_RS04555 at 968.460 kb on + strand at 968.460 kb on + strand at 968.461 kb on - strand at 968.461 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 966,863 - -1.3 967,230 + RS_RS04550 0.29 -2.4 967,359 + RS_RS04550 0.42 +2.3 967,360 - RS_RS04550 0.42 -1.5 967,360 - -2.5 967,441 - RS_RS04550 0.50 -1.1 967,965 - -0.6 968,005 + -0.7 968,239 - RS_RS04555 0.53 +0.0 968,239 - RS_RS04555 0.53 -0.1 968,239 - RS_RS04555 0.53 -0.7 968,460 + -1.7 968,460 + +0.8 968,461 - +2.2 968,461 - -0.6
Or see this region's nucleotide sequence