Experiment: L-Aspartic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS20515 and RS_RS20520 are separated by 94 nucleotides RS_RS20520 and RS_RS20525 are separated by 443 nucleotides RS_RS20525 and RS_RS20530 are separated by 44 nucleotides RS_RS20530 and RS_RS20535 are separated by 7 nucleotides
RS_RS20515: RS_RS20515 - ABC transporter ATP-binding protein, at 896,786 to 897,529
_RS20515
RS_RS20520: RS_RS20520 - hypothetical protein, at 897,624 to 897,944
_RS20520
RS_RS20525: RS_RS20525 - cytochrome P450, at 898,388 to 899,584
_RS20525
RS_RS20530: RS_RS20530 - EamA/RhaT family transporter, at 899,629 to 900,540
_RS20530
RS_RS20535: RS_RS20535 - membrane protein, at 900,548 to 901,360
_RS20535
Position (kb) 898
899
900 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 897.417 kb on - strand, within RS_RS20515 at 897.422 kb on + strand, within RS_RS20515 at 897.423 kb on - strand, within RS_RS20515 at 897.423 kb on - strand, within RS_RS20515 at 897.500 kb on + strand at 897.501 kb on + strand at 897.501 kb on - strand at 897.501 kb on - strand at 897.501 kb on - strand at 897.745 kb on + strand, within RS_RS20520 at 897.745 kb on + strand, within RS_RS20520 at 897.745 kb on + strand, within RS_RS20520 at 897.745 kb on + strand, within RS_RS20520 at 897.745 kb on + strand, within RS_RS20520 at 897.745 kb on + strand, within RS_RS20520 at 897.746 kb on - strand, within RS_RS20520 at 897.748 kb on + strand, within RS_RS20520 at 897.748 kb on + strand, within RS_RS20520 at 897.749 kb on - strand, within RS_RS20520 at 897.752 kb on - strand, within RS_RS20520 at 897.811 kb on + strand, within RS_RS20520 at 897.811 kb on + strand, within RS_RS20520 at 897.811 kb on + strand, within RS_RS20520 at 897.811 kb on + strand at 897.832 kb on + strand, within RS_RS20520 at 897.832 kb on + strand, within RS_RS20520 at 897.833 kb on - strand, within RS_RS20520 at 897.833 kb on - strand, within RS_RS20520 at 897.833 kb on - strand, within RS_RS20520 at 897.833 kb on - strand, within RS_RS20520 at 897.933 kb on + strand at 897.933 kb on + strand at 897.933 kb on + strand at 897.934 kb on - strand at 897.974 kb on + strand at 898.000 kb on - strand at 898.028 kb on + strand at 898.028 kb on + strand at 898.134 kb on + strand at 898.158 kb on + strand at 898.159 kb on - strand at 898.344 kb on - strand at 898.344 kb on - strand at 898.387 kb on + strand at 898.442 kb on + strand at 898.508 kb on + strand, within RS_RS20525 at 898.508 kb on + strand, within RS_RS20525 at 898.508 kb on + strand, within RS_RS20525 at 898.509 kb on - strand, within RS_RS20525 at 898.509 kb on - strand, within RS_RS20525 at 898.509 kb on - strand, within RS_RS20525 at 898.509 kb on - strand, within RS_RS20525 at 898.556 kb on + strand, within RS_RS20525 at 898.556 kb on + strand, within RS_RS20525 at 898.557 kb on - strand, within RS_RS20525 at 898.964 kb on + strand, within RS_RS20525 at 898.964 kb on + strand, within RS_RS20525 at 898.964 kb on + strand, within RS_RS20525 at 899.229 kb on - strand, within RS_RS20525 at 899.229 kb on - strand, within RS_RS20525 at 899.855 kb on + strand, within RS_RS20530 at 899.868 kb on - strand, within RS_RS20530 at 900.122 kb on + strand, within RS_RS20530 at 900.122 kb on + strand, within RS_RS20530 at 900.122 kb on + strand, within RS_RS20530 at 900.122 kb on + strand, within RS_RS20530 at 900.122 kb on + strand, within RS_RS20530 at 900.123 kb on - strand, within RS_RS20530 at 900.123 kb on - strand, within RS_RS20530 at 900.123 kb on - strand, within RS_RS20530 at 900.123 kb on - strand, within RS_RS20530 at 900.267 kb on - strand, within RS_RS20530 at 900.291 kb on - strand, within RS_RS20530
Per-strain Table
Position Strand Gene LocusTag Fraction L-Aspartic Acid (C) remove 897,417 - RS_RS20515 0.85 +1.2 897,422 + RS_RS20515 0.85 +0.6 897,423 - RS_RS20515 0.86 -0.4 897,423 - RS_RS20515 0.86 -2.1 897,500 + -0.3 897,501 + -0.3 897,501 - +0.2 897,501 - +1.2 897,501 - -1.9 897,745 + RS_RS20520 0.38 -0.8 897,745 + RS_RS20520 0.38 -3.1 897,745 + RS_RS20520 0.38 +0.1 897,745 + RS_RS20520 0.38 -1.8 897,745 + RS_RS20520 0.38 +0.3 897,745 + RS_RS20520 0.38 +0.7 897,746 - RS_RS20520 0.38 -1.9 897,748 + RS_RS20520 0.39 +1.2 897,748 + RS_RS20520 0.39 +0.8 897,749 - RS_RS20520 0.39 -1.8 897,752 - RS_RS20520 0.40 -1.3 897,811 + RS_RS20520 0.58 -0.6 897,811 + RS_RS20520 0.58 -0.6 897,811 + RS_RS20520 0.58 +0.1 897,811 + -0.3 897,832 + RS_RS20520 0.65 -0.8 897,832 + RS_RS20520 0.65 +0.7 897,833 - RS_RS20520 0.65 -0.3 897,833 - RS_RS20520 0.65 +1.2 897,833 - RS_RS20520 0.65 -0.3 897,833 - RS_RS20520 0.65 -1.3 897,933 + +0.3 897,933 + +0.7 897,933 + -0.2 897,934 - -0.3 897,974 + +1.2 898,000 - +1.7 898,028 + +0.6 898,028 + +1.2 898,134 + -0.6 898,158 + -0.8 898,159 - -0.3 898,344 - +0.0 898,344 - -1.6 898,387 + +1.2 898,442 + -0.2 898,508 + RS_RS20525 0.10 +1.2 898,508 + RS_RS20525 0.10 +0.2 898,508 + RS_RS20525 0.10 +0.6 898,509 - RS_RS20525 0.10 +0.0 898,509 - RS_RS20525 0.10 -0.7 898,509 - RS_RS20525 0.10 -0.8 898,509 - RS_RS20525 0.10 -0.6 898,556 + RS_RS20525 0.14 -0.6 898,556 + RS_RS20525 0.14 -0.4 898,557 - RS_RS20525 0.14 -0.5 898,964 + RS_RS20525 0.48 -1.6 898,964 + RS_RS20525 0.48 +3.8 898,964 + RS_RS20525 0.48 -0.4 899,229 - RS_RS20525 0.70 +1.2 899,229 - RS_RS20525 0.70 +0.5 899,855 + RS_RS20530 0.25 -1.3 899,868 - RS_RS20530 0.26 +0.5 900,122 + RS_RS20530 0.54 +0.3 900,122 + RS_RS20530 0.54 -0.1 900,122 + RS_RS20530 0.54 -0.3 900,122 + RS_RS20530 0.54 -1.6 900,122 + RS_RS20530 0.54 +0.2 900,123 - RS_RS20530 0.54 +0.7 900,123 - RS_RS20530 0.54 -0.0 900,123 - RS_RS20530 0.54 +0.9 900,123 - RS_RS20530 0.54 -1.0 900,267 - RS_RS20530 0.70 -0.5 900,291 - RS_RS20530 0.73 +0.4
Or see this region's nucleotide sequence