Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS07015

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS07010 and RS_RS07015 are separated by 10 nucleotidesRS_RS07015 and RS_RS07020 overlap by 4 nucleotidesRS_RS07020 and RS_RS07025 are separated by 117 nucleotides RS_RS07010: RS_RS07010 - cell division protein FtsZ, at 1,492,417 to 1,493,643 _RS07010 RS_RS07015: RS_RS07015 - DNA ligase (NAD(+)) LigA, at 1,493,654 to 1,496,095 _RS07015 RS_RS07020: RS_RS07020 - peptide deformylase, at 1,496,092 to 1,496,625 _RS07020 RS_RS07025: RS_RS07025 - hypothetical protein, at 1,496,743 to 1,497,816 _RS07025 Position (kb) 1493 1494 1495 1496 1497Strain fitness (log2 ratio) -2 -1 0 1at 1493.467 kb on + strand, within RS_RS07010at 1493.575 kb on + strandat 1496.441 kb on - strand, within RS_RS07020at 1496.443 kb on - strand, within RS_RS07020at 1496.875 kb on + strand, within RS_RS07025at 1496.876 kb on - strand, within RS_RS07025

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,493,467 + RS_RS07010 0.86 -0.8
1,493,575 + -1.8
1,496,441 - RS_RS07020 0.65 -0.2
1,496,443 - RS_RS07020 0.66 +0.7
1,496,875 + RS_RS07025 0.12 -0.3
1,496,876 - RS_RS07025 0.12 -0.1

Or see this region's nucleotide sequence