Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS07010

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS07005 and RS_RS07010 overlap by 1 nucleotidesRS_RS07010 and RS_RS07015 are separated by 10 nucleotides RS_RS07005: RS_RS07005 - chromosome segregation protein SMC, at 1,488,903 to 1,492,417 _RS07005 RS_RS07010: RS_RS07010 - cell division protein FtsZ, at 1,492,417 to 1,493,643 _RS07010 RS_RS07015: RS_RS07015 - DNA ligase (NAD(+)) LigA, at 1,493,654 to 1,496,095 _RS07015 Position (kb) 1492 1493 1494Strain fitness (log2 ratio) -2 -1 0 1at 1493.467 kb on + strand, within RS_RS07010at 1493.575 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,493,467 + RS_RS07010 0.86 -0.8
1,493,575 + -1.8

Or see this region's nucleotide sequence