Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06770

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06765 and RS_RS06770 are separated by 197 nucleotidesRS_RS06770 and RS_RS06775 overlap by 1 nucleotides RS_RS06765: RS_RS06765 - type III effector protein, at 1,435,728 to 1,437,785 _RS06765 RS_RS06770: RS_RS06770 - hypothetical protein, at 1,437,983 to 1,438,276 _RS06770 RS_RS06775: RS_RS06775 - sensor histidine kinase, at 1,438,276 to 1,439,520 _RS06775 Position (kb) 1437 1438 1439Strain fitness (log2 ratio) -2 -1 0 1at 1437.487 kb on - strand, within RS_RS06765at 1437.598 kb on + strandat 1437.655 kb on - strandat 1437.655 kb on - strandat 1437.947 kb on + strandat 1437.947 kb on + strandat 1437.948 kb on - strandat 1437.948 kb on - strandat 1437.948 kb on - strandat 1437.948 kb on - strandat 1437.948 kb on - strandat 1438.489 kb on + strand, within RS_RS06775at 1438.490 kb on - strand, within RS_RS06775at 1438.733 kb on - strand, within RS_RS06775

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,437,487 - RS_RS06765 0.85 +1.2
1,437,598 + -0.1
1,437,655 - -1.8
1,437,655 - -0.0
1,437,947 + -1.6
1,437,947 + +0.4
1,437,948 - +1.2
1,437,948 - -0.3
1,437,948 - +0.3
1,437,948 - -0.3
1,437,948 - -0.1
1,438,489 + RS_RS06775 0.17 -0.3
1,438,490 - RS_RS06775 0.17 +0.5
1,438,733 - RS_RS06775 0.37 -0.9

Or see this region's nucleotide sequence