Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06755

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06745 and RS_RS06750 are separated by 1 nucleotidesRS_RS06750 and RS_RS06755 overlap by 4 nucleotidesRS_RS06755 and RS_RS06760 are separated by 34 nucleotides RS_RS06745: RS_RS06745 - sulfate ABC transporter permease subunit CysT, at 1,431,550 to 1,432,464 _RS06745 RS_RS06750: RS_RS06750 - sulfate ABC transporter permease subunit CysW, at 1,432,466 to 1,433,446 _RS06750 RS_RS06755: RS_RS06755 - sulfate/thiosulfate import ATP-binding protein CysA, at 1,433,443 to 1,434,561 _RS06755 RS_RS06760: RS_RS06760 - CysB family HTH-type transcriptional regulator, at 1,434,596 to 1,435,579 _RS06760 Position (kb) 1433 1434 1435Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1432.650 kb on - strand, within RS_RS06750at 1432.853 kb on + strand, within RS_RS06750at 1433.192 kb on - strand, within RS_RS06750at 1433.219 kb on + strand, within RS_RS06750at 1433.220 kb on - strand, within RS_RS06750at 1433.220 kb on - strand, within RS_RS06750at 1433.690 kb on - strand, within RS_RS06755at 1434.911 kb on + strand, within RS_RS06760at 1434.911 kb on + strand, within RS_RS06760at 1434.950 kb on + strand, within RS_RS06760at 1435.085 kb on + strand, within RS_RS06760at 1435.184 kb on + strand, within RS_RS06760

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,432,650 - RS_RS06750 0.19 +0.2
1,432,853 + RS_RS06750 0.39 -1.8
1,433,192 - RS_RS06750 0.74 +1.2
1,433,219 + RS_RS06750 0.77 -1.1
1,433,220 - RS_RS06750 0.77 +1.2
1,433,220 - RS_RS06750 0.77 -0.3
1,433,690 - RS_RS06755 0.22 -0.3
1,434,911 + RS_RS06760 0.32 -0.8
1,434,911 + RS_RS06760 0.32 -0.3
1,434,950 + RS_RS06760 0.36 -0.3
1,435,085 + RS_RS06760 0.50 -4.2
1,435,184 + RS_RS06760 0.60 -4.0

Or see this region's nucleotide sequence