Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18365

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18350 and RS_RS18355 are separated by 39 nucleotidesRS_RS18355 and RS_RS18360 are separated by 103 nucleotidesRS_RS18360 and RS_RS18365 overlap by 4 nucleotidesRS_RS18365 and RS_RS18370 are separated by 39 nucleotidesRS_RS18370 and RS_RS18375 are separated by 354 nucleotides RS_RS18350: RS_RS18350 - hypothetical protein, at 321,762 to 322,007 _RS18350 RS_RS18355: RS_RS18355 - hypothetical protein, at 322,047 to 322,352 _RS18355 RS_RS18360: RS_RS18360 - hypothetical protein, at 322,456 to 322,773 _RS18360 RS_RS18365: RS_RS18365 - ferrous iron transport protein B, at 322,770 to 324,635 _RS18365 RS_RS18370: RS_RS18370 - iron transporter FeoA, at 324,675 to 324,986 _RS18370 RS_RS18375: RS_RS18375 - PAS domain S-box protein, at 325,341 to 327,791 _RS18375 Position (kb) 322 323 324 325Strain fitness (log2 ratio) -2 -1 0 1 2at 321.991 kb on - strandat 321.991 kb on - strandat 322.375 kb on - strandat 322.385 kb on + strandat 322.386 kb on - strandat 325.009 kb on - strandat 325.014 kb on - strandat 325.014 kb on - strandat 325.014 kb on - strandat 325.014 kb on - strandat 325.018 kb on - strandat 325.018 kb on - strandat 325.018 kb on - strandat 325.018 kb on - strandat 325.018 kb on - strandat 325.101 kb on + strandat 325.126 kb on + strandat 325.126 kb on + strandat 325.126 kb on + strandat 325.126 kb on + strandat 325.127 kb on - strandat 325.127 kb on - strandat 325.127 kb on - strandat 325.127 kb on - strandat 325.127 kb on - strandat 325.194 kb on + strandat 325.194 kb on + strandat 325.194 kb on + strandat 325.195 kb on - strandat 325.195 kb on - strandat 325.195 kb on - strandat 325.235 kb on - strandat 325.235 kb on - strandat 325.271 kb on + strandat 325.291 kb on - strandat 325.293 kb on + strandat 325.293 kb on + strandat 325.296 kb on + strandat 325.296 kb on + strandat 325.330 kb on - strandat 325.450 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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321,991 - -0.1
321,991 - -2.1
322,375 - -1.0
322,385 + -0.3
322,386 - -0.8
325,009 - -0.3
325,014 - -1.7
325,014 - -0.1
325,014 - -1.5
325,014 - +1.0
325,018 - -0.9
325,018 - -0.9
325,018 - +0.4
325,018 - +0.5
325,018 - +0.5
325,101 + +0.4
325,126 + -0.1
325,126 + +0.0
325,126 + -0.3
325,126 + +0.2
325,127 - -0.2
325,127 - +0.3
325,127 - -0.8
325,127 - -0.4
325,127 - -0.3
325,194 + -2.4
325,194 + +0.4
325,194 + -0.3
325,195 - -2.1
325,195 - -0.8
325,195 - +2.0
325,235 - -1.7
325,235 - -1.0
325,271 + -0.3
325,291 - -1.7
325,293 + -0.6
325,293 + -0.2
325,296 + +2.0
325,296 + +1.0
325,330 - +1.0
325,450 - -0.9

Or see this region's nucleotide sequence