Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS16615

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS16610 and RS_RS16615 are separated by 96 nucleotidesRS_RS16615 and RS_RS16620 are separated by 89 nucleotides RS_RS16610: RS_RS16610 - membrane protein, at 3,577,002 to 3,579,365 _RS16610 RS_RS16615: RS_RS16615 - ATP synthase epsilon chain 1, at 3,579,462 to 3,579,875 _RS16615 RS_RS16620: RS_RS16620 - ATP synthase subunit beta, at 3,579,965 to 3,581,368 _RS16620 Position (kb) 3579 3580Strain fitness (log2 ratio) -1 0 1at 3579.155 kb on - strandat 3579.155 kb on - strandat 3579.155 kb on - strandat 3579.241 kb on + strandat 3579.242 kb on - strandat 3579.389 kb on + strandat 3579.390 kb on - strandat 3579.967 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,579,155 - -0.8
3,579,155 - -0.7
3,579,155 - -0.1
3,579,241 + -0.1
3,579,242 - -1.4
3,579,389 + -0.1
3,579,390 - -0.6
3,579,967 - +1.2

Or see this region's nucleotide sequence