Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS13990

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS13985 and RS_RS13990 are separated by 63 nucleotidesRS_RS13990 and RS_RS13995 are separated by 228 nucleotides RS_RS13985: RS_RS13985 - hemagglutinin, at 3,006,503 to 3,007,588 _RS13985 RS_RS13990: RS_RS13990 - DUF2147 domain-containing protein, at 3,007,652 to 3,008,110 _RS13990 RS_RS13995: RS_RS13995 - membrane protein, at 3,008,339 to 3,009,886 _RS13995 Position (kb) 3007 3008 3009Strain fitness (log2 ratio) -1 0 1 2at 3006.931 kb on - strand, within RS_RS13985at 3008.003 kb on + strand, within RS_RS13990at 3008.003 kb on + strand, within RS_RS13990at 3008.004 kb on - strand, within RS_RS13990at 3008.109 kb on - strandat 3008.511 kb on - strand, within RS_RS13995at 3008.511 kb on - strand, within RS_RS13995at 3008.592 kb on - strand, within RS_RS13995at 3008.714 kb on + strand, within RS_RS13995at 3008.766 kb on - strand, within RS_RS13995at 3009.003 kb on - strand, within RS_RS13995at 3009.003 kb on - strand, within RS_RS13995

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,006,931 - RS_RS13985 0.39 -0.1
3,008,003 + RS_RS13990 0.76 +0.2
3,008,003 + RS_RS13990 0.76 +2.2
3,008,004 - RS_RS13990 0.77 -0.1
3,008,109 - +0.2
3,008,511 - RS_RS13995 0.11 -0.1
3,008,511 - RS_RS13995 0.11 -0.5
3,008,592 - RS_RS13995 0.16 -1.0
3,008,714 + RS_RS13995 0.24 +0.6
3,008,766 - RS_RS13995 0.28 -0.8
3,009,003 - RS_RS13995 0.43 -0.6
3,009,003 - RS_RS13995 0.43 -1.3

Or see this region's nucleotide sequence