Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS13740

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS13735 and RS_RS13740 are separated by 101 nucleotidesRS_RS13740 and RS_RS13745 are separated by 150 nucleotidesRS_RS13745 and RS_RS13750 are separated by 75 nucleotides RS_RS13735: RS_RS13735 - 4-hydroxy-tetrahydrodipicolinate reductase, at 2,956,139 to 2,956,930 _RS13735 RS_RS13740: RS_RS13740 - outer membrane protein assembly factor BamE, at 2,957,032 to 2,957,691 _RS13740 RS_RS13745: RS_RS13745 - ferric iron uptake transcriptional regulator, at 2,957,842 to 2,958,273 _RS13745 RS_RS13750: RS_RS13750 - transcriptional regulator, at 2,958,349 to 2,959,392 _RS13750 Position (kb) 2957 2958Strain fitness (log2 ratio) -1 0 1 2 3 4at 2956.056 kb on - strandat 2956.058 kb on - strandat 2956.140 kb on + strandat 2957.391 kb on - strand, within RS_RS13740at 2957.822 kb on + strandat 2957.822 kb on + strandat 2958.605 kb on + strand, within RS_RS13750at 2958.605 kb on + strand, within RS_RS13750

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,956,056 - -0.6
2,956,058 - -1.6
2,956,140 + +0.1
2,957,391 - RS_RS13740 0.54 +0.2
2,957,822 + -0.6
2,957,822 + -1.7
2,958,605 + RS_RS13750 0.25 +4.0
2,958,605 + RS_RS13750 0.25 +4.0

Or see this region's nucleotide sequence