Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03050

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03040 and RS_RS03045 are separated by 101 nucleotidesRS_RS03045 and RS_RS03050 are separated by 364 nucleotidesRS_RS03050 and RS_RS03055 are separated by 264 nucleotides RS_RS03040: RS_RS03040 - glutathione S-transferase family protein, at 654,537 to 655,178 _RS03040 RS_RS03045: RS_RS03045 - hypothetical protein, at 655,280 to 655,526 _RS03045 RS_RS03050: RS_RS03050 - hypothetical protein, at 655,891 to 656,583 _RS03050 RS_RS03055: RS_RS03055 - hypothetical protein, at 656,848 to 657,765 _RS03055 Position (kb) 655 656 657Strain fitness (log2 ratio) -1 0 1 2at 654.937 kb on + strand, within RS_RS03040at 654.938 kb on - strand, within RS_RS03040at 654.938 kb on - strand, within RS_RS03040at 654.952 kb on + strand, within RS_RS03040at 654.953 kb on - strand, within RS_RS03040at 654.958 kb on + strand, within RS_RS03040at 654.985 kb on - strand, within RS_RS03040at 655.036 kb on + strand, within RS_RS03040at 655.102 kb on - strand, within RS_RS03040at 655.151 kb on - strandat 655.151 kb on - strandat 655.212 kb on + strandat 655.212 kb on + strandat 655.213 kb on - strandat 655.213 kb on - strandat 655.213 kb on - strandat 655.655 kb on - strandat 655.868 kb on + strandat 655.868 kb on + strandat 655.868 kb on + strandat 656.098 kb on + strand, within RS_RS03050at 656.099 kb on - strand, within RS_RS03050at 656.099 kb on - strand, within RS_RS03050at 656.184 kb on + strand, within RS_RS03050at 656.230 kb on + strand, within RS_RS03050at 656.248 kb on + strand, within RS_RS03050at 656.248 kb on + strand, within RS_RS03050at 656.398 kb on + strand, within RS_RS03050at 656.398 kb on + strand, within RS_RS03050at 656.407 kb on + strand, within RS_RS03050at 656.407 kb on + strand, within RS_RS03050at 656.408 kb on - strand, within RS_RS03050at 656.408 kb on - strand, within RS_RS03050at 656.428 kb on + strand, within RS_RS03050at 656.429 kb on - strand, within RS_RS03050at 656.429 kb on - strand, within RS_RS03050at 656.554 kb on + strandat 656.555 kb on - strandat 656.609 kb on + strandat 656.609 kb on + strandat 656.609 kb on + strandat 656.609 kb on + strandat 656.806 kb on + strandat 656.807 kb on - strandat 656.944 kb on + strand, within RS_RS03055at 656.945 kb on - strand, within RS_RS03055at 656.950 kb on + strand, within RS_RS03055at 657.031 kb on + strand, within RS_RS03055at 657.032 kb on - strand, within RS_RS03055at 657.064 kb on + strand, within RS_RS03055at 657.065 kb on - strand, within RS_RS03055at 657.098 kb on - strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.107 kb on - strand, within RS_RS03055at 657.107 kb on - strand, within RS_RS03055at 657.139 kb on + strand, within RS_RS03055at 657.242 kb on - strand, within RS_RS03055at 657.260 kb on - strand, within RS_RS03055at 657.261 kb on + strand, within RS_RS03055at 657.262 kb on - strand, within RS_RS03055at 657.286 kb on + strand, within RS_RS03055at 657.286 kb on + strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.550 kb on + strand, within RS_RS03055at 657.551 kb on - strand, within RS_RS03055at 657.551 kb on - strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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654,937 + RS_RS03040 0.62 +2.1
654,938 - RS_RS03040 0.62 +0.1
654,938 - RS_RS03040 0.62 -0.3
654,952 + RS_RS03040 0.65 -1.3
654,953 - RS_RS03040 0.65 -0.5
654,958 + RS_RS03040 0.66 -0.4
654,985 - RS_RS03040 0.70 +0.9
655,036 + RS_RS03040 0.78 -0.3
655,102 - RS_RS03040 0.88 -0.1
655,151 - +0.5
655,151 - +1.3
655,212 + -0.9
655,212 + +1.5
655,213 - -0.2
655,213 - +0.2
655,213 - +2.1
655,655 - -0.2
655,868 + -0.3
655,868 + -0.2
655,868 + -0.1
656,098 + RS_RS03050 0.30 +2.1
656,099 - RS_RS03050 0.30 -0.7
656,099 - RS_RS03050 0.30 +0.7
656,184 + RS_RS03050 0.42 +0.0
656,230 + RS_RS03050 0.49 +0.1
656,248 + RS_RS03050 0.52 -0.1
656,248 + RS_RS03050 0.52 -0.4
656,398 + RS_RS03050 0.73 +0.0
656,398 + RS_RS03050 0.73 -0.2
656,407 + RS_RS03050 0.74 -0.5
656,407 + RS_RS03050 0.74 +0.3
656,408 - RS_RS03050 0.75 +0.5
656,408 - RS_RS03050 0.75 -0.3
656,428 + RS_RS03050 0.77 -0.5
656,429 - RS_RS03050 0.78 -0.4
656,429 - RS_RS03050 0.78 -0.9
656,554 + -0.5
656,555 - -1.0
656,609 + -0.7
656,609 + +1.2
656,609 + -0.1
656,609 + +0.7
656,806 + -0.2
656,807 - +0.2
656,944 + RS_RS03055 0.10 +0.3
656,945 - RS_RS03055 0.11 -0.5
656,950 + RS_RS03055 0.11 +0.1
657,031 + RS_RS03055 0.20 -0.5
657,032 - RS_RS03055 0.20 +2.1
657,064 + RS_RS03055 0.24 +0.8
657,065 - RS_RS03055 0.24 -0.4
657,098 - RS_RS03055 0.27 +2.1
657,106 + RS_RS03055 0.28 +0.5
657,106 + RS_RS03055 0.28 -0.5
657,106 + RS_RS03055 0.28 +1.1
657,106 + RS_RS03055 0.28 -1.5
657,106 + RS_RS03055 0.28 -1.1
657,107 - RS_RS03055 0.28 +1.2
657,107 - RS_RS03055 0.28 -0.9
657,139 + RS_RS03055 0.32 -0.9
657,242 - RS_RS03055 0.43 -0.4
657,260 - RS_RS03055 0.45 -1.1
657,261 + RS_RS03055 0.45 +0.1
657,262 - RS_RS03055 0.45 -0.7
657,286 + RS_RS03055 0.48 -0.1
657,286 + RS_RS03055 0.48 +0.1
657,287 - RS_RS03055 0.48 -0.2
657,287 - RS_RS03055 0.48 -0.3
657,287 - RS_RS03055 0.48 +0.7
657,287 - RS_RS03055 0.48 -0.2
657,542 - RS_RS03055 0.76 -0.9
657,542 - RS_RS03055 0.76 +0.5
657,542 - RS_RS03055 0.76 +1.1
657,550 + RS_RS03055 0.76 -0.7
657,551 - RS_RS03055 0.77 -0.1
657,551 - RS_RS03055 0.77 -0.5
657,583 + RS_RS03055 0.80 +0.2
657,583 + RS_RS03055 0.80 -0.3
657,583 + RS_RS03055 0.80 -0.4
657,583 + RS_RS03055 0.80 -0.9

Or see this region's nucleotide sequence