Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02675

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02670 and RS_RS02675 are separated by 132 nucleotidesRS_RS02675 and RS_RS02680 are separated by 10 nucleotides RS_RS02670: RS_RS02670 - long-chain fatty acid--CoA ligase, at 574,378 to 576,103 _RS02670 RS_RS02675: RS_RS02675 - hypothetical protein, at 576,236 to 576,649 _RS02675 RS_RS02680: RS_RS02680 - 3-oxoacyl-ACP reductase, at 576,660 to 578,072 _RS02680 Position (kb) 576 577Strain fitness (log2 ratio) -2 -1 0 1 2at 575.300 kb on + strand, within RS_RS02670at 575.301 kb on - strand, within RS_RS02670at 575.430 kb on + strand, within RS_RS02670at 575.430 kb on + strand, within RS_RS02670at 575.430 kb on + strandat 575.431 kb on - strand, within RS_RS02670at 575.431 kb on - strand, within RS_RS02670at 575.817 kb on + strand, within RS_RS02670at 576.338 kb on + strand, within RS_RS02675at 576.947 kb on - strand, within RS_RS02680at 576.947 kb on - strand, within RS_RS02680at 576.947 kb on - strand, within RS_RS02680at 577.223 kb on - strand, within RS_RS02680at 577.453 kb on + strand, within RS_RS02680at 577.522 kb on + strand, within RS_RS02680

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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575,300 + RS_RS02670 0.53 -1.8
575,301 - RS_RS02670 0.53 +0.5
575,430 + RS_RS02670 0.61 -0.3
575,430 + RS_RS02670 0.61 +0.3
575,430 + +2.1
575,431 - RS_RS02670 0.61 +2.1
575,431 - RS_RS02670 0.61 -0.1
575,817 + RS_RS02670 0.83 -1.1
576,338 + RS_RS02675 0.25 -0.5
576,947 - RS_RS02680 0.20 -2.0
576,947 - RS_RS02680 0.20 -0.0
576,947 - RS_RS02680 0.20 +0.2
577,223 - RS_RS02680 0.40 +0.1
577,453 + RS_RS02680 0.56 -0.3
577,522 + RS_RS02680 0.61 +1.3

Or see this region's nucleotide sequence