Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18450 and RS_RS18455 overlap by 4 nucleotides RS_RS18455 and RS_RS18460 overlap by 4 nucleotides
RS_RS18450: RS_RS18450 - TIGR02680 family protein, at 345,276 to 349,406
_RS18450
RS_RS18455: RS_RS18455 - TIGR02678 family protein, at 349,403 to 350,653
_RS18455
RS_RS18460: RS_RS18460 - TIGR02677 family protein, at 350,650 to 352,203
_RS18460
Position (kb) 349
350
351 Strain fitness (log2 ratio) -2
-1
0
1
2 at 348.604 kb on + strand, within RS_RS18450 at 348.604 kb on + strand, within RS_RS18450 at 348.605 kb on - strand, within RS_RS18450 at 348.646 kb on + strand, within RS_RS18450 at 348.647 kb on - strand, within RS_RS18450 at 348.668 kb on - strand, within RS_RS18450 at 348.668 kb on - strand, within RS_RS18450 at 348.795 kb on + strand, within RS_RS18450 at 348.826 kb on + strand, within RS_RS18450 at 348.826 kb on + strand, within RS_RS18450 at 348.913 kb on - strand, within RS_RS18450 at 348.983 kb on + strand, within RS_RS18450 at 349.066 kb on + strand at 349.066 kb on + strand at 349.115 kb on - strand at 349.115 kb on - strand at 349.119 kb on + strand at 349.119 kb on + strand at 349.119 kb on + strand at 349.119 kb on + strand at 349.120 kb on - strand at 349.319 kb on - strand at 349.602 kb on + strand, within RS_RS18455 at 349.603 kb on - strand, within RS_RS18455 at 349.603 kb on - strand, within RS_RS18455 at 349.603 kb on - strand, within RS_RS18455 at 349.869 kb on + strand, within RS_RS18455 at 349.869 kb on + strand, within RS_RS18455 at 349.869 kb on + strand, within RS_RS18455 at 349.869 kb on + strand, within RS_RS18455 at 349.870 kb on - strand, within RS_RS18455 at 349.903 kb on - strand, within RS_RS18455 at 349.955 kb on - strand, within RS_RS18455 at 349.955 kb on - strand, within RS_RS18455 at 349.955 kb on - strand, within RS_RS18455 at 349.958 kb on + strand, within RS_RS18455 at 349.958 kb on + strand, within RS_RS18455 at 350.103 kb on + strand, within RS_RS18455 at 350.103 kb on + strand, within RS_RS18455 at 350.104 kb on - strand, within RS_RS18455 at 350.180 kb on + strand, within RS_RS18455 at 350.181 kb on - strand, within RS_RS18455 at 350.181 kb on - strand, within RS_RS18455 at 350.360 kb on + strand, within RS_RS18455 at 350.376 kb on + strand, within RS_RS18455 at 350.439 kb on + strand, within RS_RS18455 at 350.440 kb on - strand, within RS_RS18455 at 351.328 kb on + strand, within RS_RS18460 at 351.329 kb on - strand, within RS_RS18460 at 351.577 kb on + strand, within RS_RS18460 at 351.578 kb on - strand, within RS_RS18460 at 351.578 kb on - strand, within RS_RS18460 at 351.582 kb on - strand, within RS_RS18460 at 351.582 kb on - strand, within RS_RS18460 at 351.602 kb on + strand, within RS_RS18460 at 351.603 kb on - strand, within RS_RS18460 at 351.632 kb on + strand, within RS_RS18460 at 351.634 kb on + strand, within RS_RS18460 at 351.634 kb on + strand, within RS_RS18460 at 351.634 kb on + strand, within RS_RS18460 at 351.635 kb on - strand, within RS_RS18460 at 351.635 kb on - strand, within RS_RS18460 at 351.635 kb on - strand, within RS_RS18460
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 348,604 + RS_RS18450 0.81 +1.8 348,604 + RS_RS18450 0.81 +0.6 348,605 - RS_RS18450 0.81 +0.4 348,646 + RS_RS18450 0.82 -0.2 348,647 - RS_RS18450 0.82 -0.7 348,668 - RS_RS18450 0.82 +0.8 348,668 - RS_RS18450 0.82 -0.3 348,795 + RS_RS18450 0.85 +0.4 348,826 + RS_RS18450 0.86 -0.2 348,826 + RS_RS18450 0.86 -1.6 348,913 - RS_RS18450 0.88 +0.8 348,983 + RS_RS18450 0.90 +0.1 349,066 + -0.9 349,066 + +0.8 349,115 - -0.4 349,115 - +0.1 349,119 + -0.2 349,119 + +1.4 349,119 + -0.1 349,119 + -0.8 349,120 - +1.4 349,319 - -0.0 349,602 + RS_RS18455 0.16 +1.4 349,603 - RS_RS18455 0.16 -0.2 349,603 - RS_RS18455 0.16 +1.3 349,603 - RS_RS18455 0.16 -0.6 349,869 + RS_RS18455 0.37 +0.2 349,869 + RS_RS18455 0.37 -0.3 349,869 + RS_RS18455 0.37 +2.4 349,869 + RS_RS18455 0.37 -0.1 349,870 - RS_RS18455 0.37 +2.4 349,903 - RS_RS18455 0.40 -2.6 349,955 - RS_RS18455 0.44 +0.4 349,955 - RS_RS18455 0.44 +2.4 349,955 - RS_RS18455 0.44 +0.1 349,958 + RS_RS18455 0.44 -0.6 349,958 + RS_RS18455 0.44 +0.2 350,103 + RS_RS18455 0.56 -0.7 350,103 + RS_RS18455 0.56 -0.3 350,104 - RS_RS18455 0.56 -2.1 350,180 + RS_RS18455 0.62 +0.0 350,181 - RS_RS18455 0.62 +0.3 350,181 - RS_RS18455 0.62 +1.4 350,360 + RS_RS18455 0.76 -0.0 350,376 + RS_RS18455 0.78 -0.4 350,439 + RS_RS18455 0.83 +0.4 350,440 - RS_RS18455 0.83 -0.2 351,328 + RS_RS18460 0.44 -1.1 351,329 - RS_RS18460 0.44 -0.9 351,577 + RS_RS18460 0.60 -1.3 351,578 - RS_RS18460 0.60 +0.5 351,578 - RS_RS18460 0.60 -1.1 351,582 - RS_RS18460 0.60 +0.5 351,582 - RS_RS18460 0.60 +0.1 351,602 + RS_RS18460 0.61 +2.4 351,603 - RS_RS18460 0.61 -0.4 351,632 + RS_RS18460 0.63 -0.5 351,634 + RS_RS18460 0.63 +0.4 351,634 + RS_RS18460 0.63 +0.1 351,634 + RS_RS18460 0.63 -0.5 351,635 - RS_RS18460 0.63 +0.0 351,635 - RS_RS18460 0.63 +0.4 351,635 - RS_RS18460 0.63 +1.8
Or see this region's nucleotide sequence