Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06725

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06715 and RS_RS06720 are separated by 11 nucleotidesRS_RS06720 and RS_RS06725 are separated by 16 nucleotidesRS_RS06725 and RS_RS06730 are separated by 70 nucleotidesRS_RS06730 and RS_RS06735 are separated by 39 nucleotides RS_RS06715: RS_RS06715 - alkanesulfonate monooxygenase, at 1,426,670 to 1,427,833 _RS06715 RS_RS06720: RS_RS06720 - aliphatic sulfonate ABC transporter permease SsuC, at 1,427,845 to 1,428,639 _RS06720 RS_RS06725: RS_RS06725 - aliphatic sulfonate ABC transporter ATP-binding protein, at 1,428,656 to 1,429,510 _RS06725 RS_RS06730: RS_RS06730 - transporter, at 1,429,581 to 1,429,796 _RS06730 RS_RS06735: RS_RS06735 - EAL domain-containing protein, at 1,429,836 to 1,430,741 _RS06735 Position (kb) 1428 1429 1430Strain fitness (log2 ratio) -2 -1 0 1at 1428.275 kb on - strand, within RS_RS06720at 1428.286 kb on + strand, within RS_RS06720at 1428.484 kb on + strand, within RS_RS06720at 1428.484 kb on + strand, within RS_RS06720at 1428.547 kb on + strand, within RS_RS06720at 1429.508 kb on + strandat 1429.568 kb on - strandat 1429.568 kb on - strandat 1429.603 kb on + strand, within RS_RS06730at 1429.792 kb on + strandat 1429.793 kb on - strandat 1430.150 kb on + strand, within RS_RS06735at 1430.160 kb on + strand, within RS_RS06735at 1430.161 kb on - strand, within RS_RS06735at 1430.161 kb on - strand, within RS_RS06735at 1430.161 kb on - strand, within RS_RS06735at 1430.161 kb on - strand, within RS_RS06735at 1430.355 kb on + strand, within RS_RS06735

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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1,428,275 - RS_RS06720 0.54 +1.0
1,428,286 + RS_RS06720 0.55 -1.1
1,428,484 + RS_RS06720 0.80 -2.0
1,428,484 + RS_RS06720 0.80 -1.8
1,428,547 + RS_RS06720 0.88 +1.1
1,429,508 + +0.5
1,429,568 - +0.6
1,429,568 - +0.8
1,429,603 + RS_RS06730 0.10 -1.0
1,429,792 + +0.7
1,429,793 - -0.9
1,430,150 + RS_RS06735 0.35 +0.3
1,430,160 + RS_RS06735 0.36 +0.5
1,430,161 - RS_RS06735 0.36 +0.2
1,430,161 - RS_RS06735 0.36 +0.4
1,430,161 - RS_RS06735 0.36 -0.2
1,430,161 - RS_RS06735 0.36 +0.3
1,430,355 + RS_RS06735 0.57 -0.2

Or see this region's nucleotide sequence