Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06715

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06710 and RS_RS06715 are separated by 26 nucleotidesRS_RS06715 and RS_RS06720 are separated by 11 nucleotidesRS_RS06720 and RS_RS06725 are separated by 16 nucleotides RS_RS06710: RS_RS06710 - aliphatic sulfonate ABC transporter substrate-binding protein, at 1,425,633 to 1,426,643 _RS06710 RS_RS06715: RS_RS06715 - alkanesulfonate monooxygenase, at 1,426,670 to 1,427,833 _RS06715 RS_RS06720: RS_RS06720 - aliphatic sulfonate ABC transporter permease SsuC, at 1,427,845 to 1,428,639 _RS06720 RS_RS06725: RS_RS06725 - aliphatic sulfonate ABC transporter ATP-binding protein, at 1,428,656 to 1,429,510 _RS06725 Position (kb) 1426 1427 1428Strain fitness (log2 ratio) -2 -1 0 1 2at 1426.234 kb on - strand, within RS_RS06710at 1426.234 kb on - strand, within RS_RS06710at 1426.236 kb on + strand, within RS_RS06710at 1426.713 kb on - strandat 1426.754 kb on + strandat 1426.793 kb on + strand, within RS_RS06715at 1427.124 kb on - strand, within RS_RS06715at 1427.198 kb on + strand, within RS_RS06715at 1427.251 kb on + strand, within RS_RS06715at 1427.252 kb on - strand, within RS_RS06715at 1427.255 kb on + strand, within RS_RS06715at 1427.255 kb on + strand, within RS_RS06715at 1427.255 kb on + strand, within RS_RS06715at 1427.256 kb on - strand, within RS_RS06715at 1427.642 kb on + strand, within RS_RS06715at 1427.642 kb on + strand, within RS_RS06715at 1428.275 kb on - strand, within RS_RS06720at 1428.286 kb on + strand, within RS_RS06720at 1428.484 kb on + strand, within RS_RS06720at 1428.484 kb on + strand, within RS_RS06720at 1428.547 kb on + strand, within RS_RS06720

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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1,426,234 - RS_RS06710 0.59 +0.1
1,426,234 - RS_RS06710 0.59 -0.5
1,426,236 + RS_RS06710 0.60 -0.2
1,426,713 - +0.2
1,426,754 + +1.4
1,426,793 + RS_RS06715 0.11 -0.1
1,427,124 - RS_RS06715 0.39 +0.7
1,427,198 + RS_RS06715 0.45 +1.1
1,427,251 + RS_RS06715 0.50 +2.1
1,427,252 - RS_RS06715 0.50 +0.4
1,427,255 + RS_RS06715 0.50 -0.0
1,427,255 + RS_RS06715 0.50 +0.5
1,427,255 + RS_RS06715 0.50 +0.1
1,427,256 - RS_RS06715 0.50 +0.6
1,427,642 + RS_RS06715 0.84 -0.7
1,427,642 + RS_RS06715 0.84 +1.1
1,428,275 - RS_RS06720 0.54 +1.0
1,428,286 + RS_RS06720 0.55 -1.1
1,428,484 + RS_RS06720 0.80 -2.0
1,428,484 + RS_RS06720 0.80 -1.8
1,428,547 + RS_RS06720 0.88 +1.1

Or see this region's nucleotide sequence