Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06640

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06630 and RS_RS06635 are separated by 28 nucleotidesRS_RS06635 and RS_RS06640 are separated by 113 nucleotidesRS_RS06640 and RS_RS06645 are separated by 4 nucleotidesRS_RS06645 and RS_RS06650 are separated by 333 nucleotides RS_RS06630: RS_RS06630 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 1,407,143 to 1,408,303 _RS06630 RS_RS06635: RS_RS06635 - 4-amino-4-deoxy-L-arabinose transferase, at 1,408,332 to 1,408,703 _RS06635 RS_RS06640: RS_RS06640 - glycosyltransferase family 39 protein, at 1,408,817 to 1,410,487 _RS06640 RS_RS06645: RS_RS06645 - hypothetical protein, at 1,410,492 to 1,410,872 _RS06645 RS_RS06650: RS_RS06650 - pyridoxal phosphate-dependent aminotransferase, at 1,411,206 to 1,412,447 _RS06650 Position (kb) 1408 1409 1410 1411Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1410.235 kb on - strand, within RS_RS06640at 1410.348 kb on + strandat 1410.809 kb on - strand, within RS_RS06645at 1411.039 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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1,410,235 - RS_RS06640 0.85 -2.8
1,410,348 + -1.9
1,410,809 - RS_RS06645 0.83 -0.9
1,411,039 + +3.1

Or see this region's nucleotide sequence