Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03070

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03060 and RS_RS03065 overlap by 20 nucleotidesRS_RS03065 and RS_RS03070 overlap by 4 nucleotidesRS_RS03070 and RS_RS03075 are separated by 88 nucleotides RS_RS03060: RS_RS03060 - FMN-binding protein, at 657,781 to 658,296 _RS03060 RS_RS03065: RS_RS03065 - FAD:protein FMN transferase, at 658,277 to 659,173 _RS03065 RS_RS03070: RS_RS03070 - hypothetical protein, at 659,170 to 659,748 _RS03070 RS_RS03075: RS_RS03075 - hypothetical protein, at 659,837 to 660,409 _RS03075 Position (kb) 659 660Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 658.242 kb on + strand, within RS_RS03060at 658.276 kb on + strandat 658.276 kb on + strandat 658.276 kb on + strandat 658.276 kb on + strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.294 kb on + strandat 658.502 kb on + strand, within RS_RS03065at 658.503 kb on - strand, within RS_RS03065at 659.240 kb on - strand, within RS_RS03070at 659.240 kb on - strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.512 kb on + strand, within RS_RS03070at 659.513 kb on - strand, within RS_RS03070at 659.513 kb on - strand, within RS_RS03070at 659.513 kb on - strand, within RS_RS03070at 659.605 kb on + strand, within RS_RS03070at 659.605 kb on + strand, within RS_RS03070at 659.606 kb on - strand, within RS_RS03070at 659.608 kb on - strand, within RS_RS03070at 659.872 kb on - strandat 660.102 kb on + strand, within RS_RS03075at 660.103 kb on - strand, within RS_RS03075at 660.103 kb on - strand, within RS_RS03075at 660.147 kb on + strand, within RS_RS03075at 660.148 kb on - strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.240 kb on + strand, within RS_RS03075at 660.241 kb on - strand, within RS_RS03075at 660.241 kb on - strand, within RS_RS03075at 660.295 kb on + strand, within RS_RS03075at 660.295 kb on + strand, within RS_RS03075at 660.296 kb on - strand, within RS_RS03075at 660.394 kb on + strandat 660.394 kb on + strandat 660.395 kb on - strandat 660.435 kb on - strandat 660.549 kb on + strandat 660.652 kb on + strandat 660.652 kb on + strandat 660.653 kb on - strandat 660.659 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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658,242 + RS_RS03060 0.89 +0.7
658,276 + +0.7
658,276 + -0.2
658,276 + -1.5
658,276 + -0.8
658,277 - +1.3
658,277 - -0.4
658,277 - -0.4
658,277 - +2.3
658,294 + -0.3
658,502 + RS_RS03065 0.25 -0.7
658,503 - RS_RS03065 0.25 +1.3
659,240 - RS_RS03070 0.12 -1.1
659,240 - RS_RS03070 0.12 +0.7
659,512 + RS_RS03070 0.59 -0.1
659,512 + RS_RS03070 0.59 -0.7
659,512 + RS_RS03070 0.59 -0.3
659,512 + RS_RS03070 0.59 +0.1
659,512 + RS_RS03070 0.59 +0.7
659,513 - RS_RS03070 0.59 +0.1
659,513 - RS_RS03070 0.59 +0.3
659,513 - RS_RS03070 0.59 +0.1
659,605 + RS_RS03070 0.75 -1.4
659,605 + RS_RS03070 0.75 -0.3
659,606 - RS_RS03070 0.75 -0.0
659,608 - RS_RS03070 0.76 +0.3
659,872 - -0.7
660,102 + RS_RS03075 0.46 +0.7
660,103 - RS_RS03075 0.46 +0.4
660,103 - RS_RS03075 0.46 -0.4
660,147 + RS_RS03075 0.54 +0.9
660,148 - RS_RS03075 0.54 -0.9
660,240 + RS_RS03075 0.70 -0.5
660,240 + RS_RS03075 0.70 -0.8
660,240 + RS_RS03075 0.70 -0.3
660,240 + RS_RS03075 0.70 +2.3
660,240 + RS_RS03075 0.70 +0.0
660,240 + RS_RS03075 0.70 +0.9
660,240 + RS_RS03075 0.70 +1.3
660,241 - RS_RS03075 0.71 +0.3
660,241 - RS_RS03075 0.71 +0.9
660,295 + RS_RS03075 0.80 +0.3
660,295 + RS_RS03075 0.80 +0.9
660,296 - RS_RS03075 0.80 -1.1
660,394 + +1.3
660,394 + -0.0
660,395 - -1.1
660,435 - -0.1
660,549 + -3.4
660,652 + +1.1
660,652 + +0.0
660,653 - +2.3
660,659 + +1.0

Or see this region's nucleotide sequence