Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02765

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02760 and RS_RS02765 are separated by 94 nucleotidesRS_RS02765 and RS_RS02770 are separated by 274 nucleotidesRS_RS02770 and RS_RS02775 are separated by 66 nucleotides RS_RS02760: RS_RS02760 - DNA recombination/repair protein RecA, at 596,177 to 597,235 _RS02760 RS_RS02765: RS_RS02765 - regulatory protein RecX, at 597,330 to 597,809 _RS02765 RS_RS02770: RS_RS02770 - DUF2889 domain-containing protein, at 598,084 to 598,710 _RS02770 RS_RS02775: RS_RS02775 - succinyl-CoA ligase subunit beta, at 598,777 to 599,943 _RS02775 Position (kb) 597 598Strain fitness (log2 ratio) -2 -1 0 1 2at 596.507 kb on + strand, within RS_RS02760at 597.378 kb on + strand, within RS_RS02765at 597.948 kb on + strandat 597.948 kb on + strandat 598.148 kb on - strand, within RS_RS02770at 598.232 kb on + strand, within RS_RS02770at 598.232 kb on + strand, within RS_RS02770at 598.232 kb on + strand, within RS_RS02770at 598.783 kb on - strandat 598.783 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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596,507 + RS_RS02760 0.31 +2.3
597,378 + RS_RS02765 0.10 -2.3
597,948 + -0.0
597,948 + -0.1
598,148 - RS_RS02770 0.10 +2.3
598,232 + RS_RS02770 0.24 +0.6
598,232 + RS_RS02770 0.24 -0.7
598,232 + RS_RS02770 0.24 -1.0
598,783 - +1.3
598,783 - +1.8

Or see this region's nucleotide sequence