Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20035

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS20025 and RS_RS20030 are separated by 22 nucleotidesRS_RS20030 and RS_RS20035 are separated by 180 nucleotidesRS_RS20035 and RS_RS20040 are separated by 113 nucleotides RS_RS20025: RS_RS20025 - phenylacetate-CoA oxygenase/reductase subunit PaaK, at 740,383 to 741,474 _RS20025 RS_RS20030: RS_RS20030 - hypothetical protein, at 741,497 to 741,877 _RS20030 RS_RS20035: RS_RS20035 - DUF2322 domain-containing protein, at 742,058 to 742,390 _RS20035 RS_RS20040: RS_RS20040 - MFS transporter, at 742,504 to 743,811 _RS20040 Position (kb) 742 743Strain fitness (log2 ratio) -2 -1 0 1 2at 741.301 kb on + strand, within RS_RS20025at 741.301 kb on + strand, within RS_RS20025at 741.301 kb on + strand, within RS_RS20025at 741.302 kb on - strand, within RS_RS20025at 741.461 kb on - strandat 741.472 kb on + strandat 741.613 kb on - strand, within RS_RS20030at 741.652 kb on + strand, within RS_RS20030at 741.652 kb on + strand, within RS_RS20030at 741.652 kb on + strand, within RS_RS20030at 741.652 kb on + strand, within RS_RS20030at 741.653 kb on - strand, within RS_RS20030at 741.653 kb on - strand, within RS_RS20030at 741.704 kb on + strand, within RS_RS20030at 741.704 kb on + strand, within RS_RS20030at 741.799 kb on - strand, within RS_RS20030at 741.799 kb on - strand, within RS_RS20030at 741.799 kb on - strand, within RS_RS20030at 741.868 kb on - strandat 741.878 kb on + strandat 741.879 kb on - strandat 742.011 kb on - strandat 742.016 kb on - strandat 742.016 kb on - strandat 742.016 kb on - strandat 742.016 kb on - strandat 742.036 kb on + strandat 742.036 kb on + strandat 742.037 kb on - strandat 742.077 kb on + strandat 742.077 kb on + strandat 742.077 kb on + strandat 742.077 kb on + strandat 742.078 kb on - strandat 742.127 kb on - strand, within RS_RS20035at 742.205 kb on + strand, within RS_RS20035at 742.206 kb on - strand, within RS_RS20035at 742.206 kb on - strand, within RS_RS20035at 742.206 kb on - strand, within RS_RS20035at 742.206 kb on - strand, within RS_RS20035at 742.206 kb on - strand, within RS_RS20035at 742.206 kb on - strand, within RS_RS20035at 742.211 kb on + strand, within RS_RS20035at 742.212 kb on - strand, within RS_RS20035at 742.464 kb on + strandat 742.505 kb on + strandat 742.505 kb on + strandat 742.505 kb on + strandat 742.505 kb on + strandat 742.505 kb on + strandat 742.506 kb on - strandat 742.506 kb on - strandat 742.506 kb on - strandat 742.506 kb on - strandat 742.509 kb on + strandat 742.509 kb on + strandat 742.510 kb on - strandat 742.510 kb on - strandat 742.569 kb on + strandat 742.570 kb on - strandat 742.649 kb on + strand, within RS_RS20040at 742.650 kb on - strand, within RS_RS20040at 742.679 kb on + strand, within RS_RS20040at 742.680 kb on - strand, within RS_RS20040at 742.680 kb on - strand, within RS_RS20040at 742.797 kb on - strand, within RS_RS20040at 742.843 kb on + strand, within RS_RS20040at 742.918 kb on + strand, within RS_RS20040at 742.918 kb on + strand, within RS_RS20040at 742.918 kb on + strand, within RS_RS20040at 742.919 kb on - strand, within RS_RS20040at 742.919 kb on - strand, within RS_RS20040at 742.926 kb on + strand, within RS_RS20040at 742.927 kb on - strand, within RS_RS20040at 742.937 kb on - strand, within RS_RS20040at 742.958 kb on + strand, within RS_RS20040at 742.958 kb on + strand, within RS_RS20040at 742.958 kb on + strand, within RS_RS20040at 742.958 kb on + strand, within RS_RS20040at 742.958 kb on + strand, within RS_RS20040at 742.959 kb on - strand, within RS_RS20040at 742.959 kb on - strand, within RS_RS20040at 742.959 kb on - strand, within RS_RS20040at 742.959 kb on - strand, within RS_RS20040at 743.003 kb on + strand, within RS_RS20040at 743.004 kb on - strand, within RS_RS20040at 743.004 kb on - strand, within RS_RS20040at 743.004 kb on - strand, within RS_RS20040at 743.004 kb on - strand, within RS_RS20040at 743.007 kb on - strand, within RS_RS20040at 743.007 kb on - strand, within RS_RS20040at 743.048 kb on + strand, within RS_RS20040at 743.049 kb on - strand, within RS_RS20040at 743.114 kb on + strand, within RS_RS20040at 743.114 kb on + strand, within RS_RS20040at 743.115 kb on - strand, within RS_RS20040at 743.115 kb on - strand, within RS_RS20040at 743.186 kb on + strand, within RS_RS20040at 743.297 kb on + strand, within RS_RS20040at 743.298 kb on - strand, within RS_RS20040at 743.298 kb on - strand, within RS_RS20040at 743.350 kb on + strand, within RS_RS20040

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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741,301 + RS_RS20025 0.84 -0.9
741,301 + RS_RS20025 0.84 -1.0
741,301 + RS_RS20025 0.84 -0.1
741,302 - RS_RS20025 0.84 +1.9
741,461 - -1.1
741,472 + +0.1
741,613 - RS_RS20030 0.30 +0.9
741,652 + RS_RS20030 0.41 -0.5
741,652 + RS_RS20030 0.41 +0.1
741,652 + RS_RS20030 0.41 -0.3
741,652 + RS_RS20030 0.41 +0.0
741,653 - RS_RS20030 0.41 +0.3
741,653 - RS_RS20030 0.41 -0.6
741,704 + RS_RS20030 0.54 +0.5
741,704 + RS_RS20030 0.54 +0.3
741,799 - RS_RS20030 0.79 +0.0
741,799 - RS_RS20030 0.79 +1.9
741,799 - RS_RS20030 0.79 +0.5
741,868 - +1.5
741,878 + -0.1
741,879 - +0.0
742,011 - -0.4
742,016 - +1.0
742,016 - +1.2
742,016 - +1.9
742,016 - -0.6
742,036 + +0.3
742,036 + -0.1
742,037 - -0.4
742,077 + -0.3
742,077 + -0.4
742,077 + -1.4
742,077 + +1.9
742,078 - -0.9
742,127 - RS_RS20035 0.21 -0.2
742,205 + RS_RS20035 0.44 -0.3
742,206 - RS_RS20035 0.44 +0.3
742,206 - RS_RS20035 0.44 -0.8
742,206 - RS_RS20035 0.44 +0.9
742,206 - RS_RS20035 0.44 -0.4
742,206 - RS_RS20035 0.44 +0.9
742,206 - RS_RS20035 0.44 -0.4
742,211 + RS_RS20035 0.46 -0.2
742,212 - RS_RS20035 0.46 +1.9
742,464 + +0.9
742,505 + -2.3
742,505 + -0.6
742,505 + -0.8
742,505 + -0.8
742,505 + +1.6
742,506 - +0.7
742,506 - -0.1
742,506 - +0.3
742,506 - -0.3
742,509 + +1.1
742,509 + -0.5
742,510 - -2.1
742,510 - -1.0
742,569 + -2.1
742,570 - -0.9
742,649 + RS_RS20040 0.11 -0.7
742,650 - RS_RS20040 0.11 +0.5
742,679 + RS_RS20040 0.13 -1.1
742,680 - RS_RS20040 0.13 -0.4
742,680 - RS_RS20040 0.13 -0.2
742,797 - RS_RS20040 0.22 -0.2
742,843 + RS_RS20040 0.26 -0.4
742,918 + RS_RS20040 0.32 -1.5
742,918 + RS_RS20040 0.32 -1.1
742,918 + RS_RS20040 0.32 -2.6
742,919 - RS_RS20040 0.32 -0.9
742,919 - RS_RS20040 0.32 +0.1
742,926 + RS_RS20040 0.32 +1.9
742,927 - RS_RS20040 0.32 -0.4
742,937 - RS_RS20040 0.33 -0.1
742,958 + RS_RS20040 0.35 +0.3
742,958 + RS_RS20040 0.35 +0.1
742,958 + RS_RS20040 0.35 +1.9
742,958 + RS_RS20040 0.35 +0.0
742,958 + RS_RS20040 0.35 -0.6
742,959 - RS_RS20040 0.35 +0.5
742,959 - RS_RS20040 0.35 +1.9
742,959 - RS_RS20040 0.35 -0.5
742,959 - RS_RS20040 0.35 -0.6
743,003 + RS_RS20040 0.38 -0.1
743,004 - RS_RS20040 0.38 +0.1
743,004 - RS_RS20040 0.38 +0.8
743,004 - RS_RS20040 0.38 +0.9
743,004 - RS_RS20040 0.38 +0.9
743,007 - RS_RS20040 0.38 -0.1
743,007 - RS_RS20040 0.38 +0.9
743,048 + RS_RS20040 0.42 -0.1
743,049 - RS_RS20040 0.42 +0.9
743,114 + RS_RS20040 0.47 -0.9
743,114 + RS_RS20040 0.47 -0.1
743,115 - RS_RS20040 0.47 +0.3
743,115 - RS_RS20040 0.47 -0.3
743,186 + RS_RS20040 0.52 -1.7
743,297 + RS_RS20040 0.61 -0.6
743,298 - RS_RS20040 0.61 -0.6
743,298 - RS_RS20040 0.61 -1.1
743,350 + RS_RS20040 0.65 -0.7

Or see this region's nucleotide sequence