Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS01140

Experiment: D-Galactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS01135 and RS_RS01140 are separated by 422 nucleotidesRS_RS01140 and RS_RS01145 are separated by 156 nucleotides RS_RS01135: RS_RS01135 - LysE family translocator, at 253,302 to 253,937 _RS01135 RS_RS01140: RS_RS01140 - hypothetical protein, at 254,360 to 255,166 _RS01140 RS_RS01145: RS_RS01145 - EamA/RhaT family transporter, at 255,323 to 256,303 _RS01145 Position (kb) 254 255 256Strain fitness (log2 ratio) -1 0 1 2at 253.430 kb on - strand, within RS_RS01135at 253.685 kb on - strand, within RS_RS01135at 253.685 kb on - strand, within RS_RS01135at 253.693 kb on + strand, within RS_RS01135at 253.694 kb on - strand, within RS_RS01135at 253.694 kb on - strand, within RS_RS01135at 253.694 kb on - strand, within RS_RS01135at 253.788 kb on - strand, within RS_RS01135at 253.981 kb on + strandat 253.981 kb on + strandat 253.982 kb on - strandat 253.982 kb on - strandat 253.982 kb on - strandat 253.982 kb on - strandat 253.982 kb on - strandat 254.163 kb on + strandat 254.177 kb on + strandat 254.178 kb on - strandat 254.197 kb on - strandat 254.278 kb on + strandat 254.279 kb on - strandat 254.287 kb on - strandat 254.287 kb on - strandat 254.359 kb on + strandat 254.359 kb on + strandat 254.378 kb on - strandat 254.532 kb on - strand, within RS_RS01140at 254.618 kb on - strand, within RS_RS01140at 254.671 kb on + strand, within RS_RS01140at 254.671 kb on + strand, within RS_RS01140at 254.924 kb on + strand, within RS_RS01140at 254.924 kb on + strand, within RS_RS01140at 254.925 kb on - strand, within RS_RS01140at 254.927 kb on + strand, within RS_RS01140at 254.927 kb on + strand, within RS_RS01140at 254.987 kb on + strand, within RS_RS01140at 254.988 kb on - strand, within RS_RS01140at 254.988 kb on - strand, within RS_RS01140at 254.988 kb on - strand, within RS_RS01140at 255.008 kb on + strand, within RS_RS01140at 255.008 kb on + strand, within RS_RS01140at 255.009 kb on - strand, within RS_RS01140at 255.034 kb on + strand, within RS_RS01140at 255.034 kb on + strand, within RS_RS01140at 255.034 kb on + strand, within RS_RS01140at 255.034 kb on + strand, within RS_RS01140at 255.038 kb on + strand, within RS_RS01140at 255.038 kb on + strand, within RS_RS01140at 255.039 kb on - strand, within RS_RS01140at 255.039 kb on - strand, within RS_RS01140at 255.039 kb on - strand, within RS_RS01140at 255.163 kb on + strandat 255.164 kb on + strandat 255.164 kb on + strandat 255.164 kb on + strandat 255.165 kb on - strandat 255.165 kb on - strandat 255.165 kb on - strandat 255.424 kb on - strand, within RS_RS01145at 255.424 kb on - strand, within RS_RS01145at 255.733 kb on - strand, within RS_RS01145at 255.733 kb on - strand, within RS_RS01145at 255.829 kb on - strand, within RS_RS01145at 255.829 kb on - strand, within RS_RS01145at 255.999 kb on + strand, within RS_RS01145at 256.000 kb on - strand, within RS_RS01145at 256.002 kb on + strand, within RS_RS01145at 256.002 kb on + strand, within RS_RS01145at 256.002 kb on + strand, within RS_RS01145at 256.003 kb on - strand, within RS_RS01145at 256.003 kb on - strand, within RS_RS01145at 256.116 kb on + strand, within RS_RS01145at 256.116 kb on + strand, within RS_RS01145at 256.116 kb on + strand, within RS_RS01145at 256.125 kb on + strand, within RS_RS01145at 256.125 kb on + strand, within RS_RS01145at 256.125 kb on + strand, within RS_RS01145

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose (C)
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253,430 - RS_RS01135 0.20 +1.1
253,685 - RS_RS01135 0.60 -1.2
253,685 - RS_RS01135 0.60 -0.3
253,693 + RS_RS01135 0.61 +0.1
253,694 - RS_RS01135 0.62 +0.2
253,694 - RS_RS01135 0.62 +0.3
253,694 - RS_RS01135 0.62 -0.8
253,788 - RS_RS01135 0.76 -0.5
253,981 + -0.9
253,981 + +0.3
253,982 - +0.6
253,982 - -1.5
253,982 - -0.0
253,982 - +0.3
253,982 - +0.2
254,163 + +1.5
254,177 + -0.2
254,178 - +0.3
254,197 - -0.1
254,278 + +1.6
254,279 - +1.2
254,287 - +2.2
254,287 - -0.4
254,359 + -0.9
254,359 + -1.1
254,378 - -0.2
254,532 - RS_RS01140 0.21 -0.2
254,618 - RS_RS01140 0.32 -0.5
254,671 + RS_RS01140 0.39 +0.0
254,671 + RS_RS01140 0.39 +0.0
254,924 + RS_RS01140 0.70 +0.1
254,924 + RS_RS01140 0.70 +0.6
254,925 - RS_RS01140 0.70 +0.2
254,927 + RS_RS01140 0.70 +2.2
254,927 + RS_RS01140 0.70 -0.5
254,987 + RS_RS01140 0.78 -0.3
254,988 - RS_RS01140 0.78 +0.6
254,988 - RS_RS01140 0.78 -0.4
254,988 - RS_RS01140 0.78 +0.2
255,008 + RS_RS01140 0.80 -1.4
255,008 + RS_RS01140 0.80 +1.2
255,009 - RS_RS01140 0.80 -0.4
255,034 + RS_RS01140 0.84 +0.4
255,034 + RS_RS01140 0.84 -0.6
255,034 + RS_RS01140 0.84 +0.3
255,034 + RS_RS01140 0.84 -1.2
255,038 + RS_RS01140 0.84 +0.2
255,038 + RS_RS01140 0.84 +0.4
255,039 - RS_RS01140 0.84 -0.6
255,039 - RS_RS01140 0.84 +0.2
255,039 - RS_RS01140 0.84 -0.4
255,163 + -0.4
255,164 + -0.4
255,164 + -0.2
255,164 + +1.2
255,165 - +0.1
255,165 - -0.8
255,165 - -0.4
255,424 - RS_RS01145 0.10 +0.1
255,424 - RS_RS01145 0.10 +2.2
255,733 - RS_RS01145 0.42 -1.6
255,733 - RS_RS01145 0.42 +0.8
255,829 - RS_RS01145 0.52 +0.2
255,829 - RS_RS01145 0.52 -0.2
255,999 + RS_RS01145 0.69 +0.6
256,000 - RS_RS01145 0.69 -0.4
256,002 + RS_RS01145 0.69 +1.5
256,002 + RS_RS01145 0.69 +0.1
256,002 + RS_RS01145 0.69 +0.0
256,003 - RS_RS01145 0.69 -1.0
256,003 - RS_RS01145 0.69 +1.2
256,116 + RS_RS01145 0.81 -0.7
256,116 + RS_RS01145 0.81 -0.0
256,116 + RS_RS01145 0.81 -0.1
256,125 + RS_RS01145 0.82 +0.8
256,125 + RS_RS01145 0.82 -0.2
256,125 + RS_RS01145 0.82 -0.7

Or see this region's nucleotide sequence