Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18455 and RS_RS18460 overlap by 4 nucleotides RS_RS18460 and RS_RS18465 are separated by 299 nucleotides
RS_RS18455: RS_RS18455 - TIGR02678 family protein, at 349,403 to 350,653
_RS18455
RS_RS18460: RS_RS18460 - TIGR02677 family protein, at 350,650 to 352,203
_RS18460
RS_RS18465: RS_RS18465 - glutamate carboxypeptidase, at 352,503 to 353,723
_RS18465
Position (kb) 350
351
352
353 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 349.869 kb on + strand, within RS_RS18455 at 349.869 kb on + strand, within RS_RS18455 at 349.869 kb on + strand, within RS_RS18455 at 349.869 kb on + strand, within RS_RS18455 at 349.870 kb on - strand, within RS_RS18455 at 349.903 kb on - strand, within RS_RS18455 at 349.955 kb on - strand, within RS_RS18455 at 349.955 kb on - strand, within RS_RS18455 at 349.955 kb on - strand, within RS_RS18455 at 349.958 kb on + strand, within RS_RS18455 at 349.958 kb on + strand, within RS_RS18455 at 350.103 kb on + strand, within RS_RS18455 at 350.103 kb on + strand, within RS_RS18455 at 350.104 kb on - strand, within RS_RS18455 at 350.180 kb on + strand, within RS_RS18455 at 350.181 kb on - strand, within RS_RS18455 at 350.181 kb on - strand, within RS_RS18455 at 350.360 kb on + strand, within RS_RS18455 at 350.376 kb on + strand, within RS_RS18455 at 350.439 kb on + strand, within RS_RS18455 at 350.440 kb on - strand, within RS_RS18455 at 351.328 kb on + strand, within RS_RS18460 at 351.329 kb on - strand, within RS_RS18460 at 351.577 kb on + strand, within RS_RS18460 at 351.578 kb on - strand, within RS_RS18460 at 351.578 kb on - strand, within RS_RS18460 at 351.582 kb on - strand, within RS_RS18460 at 351.582 kb on - strand, within RS_RS18460 at 351.602 kb on + strand, within RS_RS18460 at 351.603 kb on - strand, within RS_RS18460 at 351.632 kb on + strand, within RS_RS18460 at 351.634 kb on + strand, within RS_RS18460 at 351.634 kb on + strand, within RS_RS18460 at 351.634 kb on + strand, within RS_RS18460 at 351.635 kb on - strand, within RS_RS18460 at 351.635 kb on - strand, within RS_RS18460 at 351.635 kb on - strand, within RS_RS18460 at 351.793 kb on - strand, within RS_RS18460 at 351.805 kb on + strand, within RS_RS18460 at 351.912 kb on - strand, within RS_RS18460 at 352.127 kb on + strand at 352.127 kb on + strand at 352.128 kb on - strand at 352.128 kb on - strand at 352.192 kb on + strand at 352.193 kb on - strand at 352.193 kb on - strand at 352.311 kb on + strand at 352.311 kb on + strand at 352.357 kb on + strand at 352.546 kb on + strand at 352.547 kb on - strand at 352.579 kb on + strand at 352.580 kb on - strand at 352.580 kb on - strand at 352.580 kb on - strand at 352.714 kb on + strand, within RS_RS18465 at 352.714 kb on + strand, within RS_RS18465 at 352.714 kb on + strand, within RS_RS18465 at 352.714 kb on + strand, within RS_RS18465 at 352.714 kb on + strand, within RS_RS18465 at 352.714 kb on + strand, within RS_RS18465 at 352.715 kb on - strand, within RS_RS18465 at 352.715 kb on - strand, within RS_RS18465 at 352.715 kb on - strand, within RS_RS18465 at 352.894 kb on + strand, within RS_RS18465 at 353.069 kb on + strand, within RS_RS18465
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 349,869 + RS_RS18455 0.37 +0.6 349,869 + RS_RS18455 0.37 -0.4 349,869 + RS_RS18455 0.37 +2.6 349,869 + RS_RS18455 0.37 -0.3 349,870 - RS_RS18455 0.37 +1.6 349,903 - RS_RS18455 0.40 -1.1 349,955 - RS_RS18455 0.44 -1.4 349,955 - RS_RS18455 0.44 +1.6 349,955 - RS_RS18455 0.44 +0.3 349,958 + RS_RS18455 0.44 -0.1 349,958 + RS_RS18455 0.44 +0.3 350,103 + RS_RS18455 0.56 -0.8 350,103 + RS_RS18455 0.56 +0.5 350,104 - RS_RS18455 0.56 -0.5 350,180 + RS_RS18455 0.62 -0.4 350,181 - RS_RS18455 0.62 +0.4 350,181 - RS_RS18455 0.62 +0.6 350,360 + RS_RS18455 0.76 +0.1 350,376 + RS_RS18455 0.78 -0.2 350,439 + RS_RS18455 0.83 -0.4 350,440 - RS_RS18455 0.83 -0.1 351,328 + RS_RS18460 0.44 -1.3 351,329 - RS_RS18460 0.44 -0.7 351,577 + RS_RS18460 0.60 -1.1 351,578 - RS_RS18460 0.60 +1.7 351,578 - RS_RS18460 0.60 -1.8 351,582 - RS_RS18460 0.60 +0.2 351,582 - RS_RS18460 0.60 +0.3 351,602 + RS_RS18460 0.61 +1.6 351,603 - RS_RS18460 0.61 +0.9 351,632 + RS_RS18460 0.63 -0.7 351,634 + RS_RS18460 0.63 -0.1 351,634 + RS_RS18460 0.63 -0.7 351,634 + RS_RS18460 0.63 +0.1 351,635 - RS_RS18460 0.63 -0.1 351,635 - RS_RS18460 0.63 -0.4 351,635 - RS_RS18460 0.63 +0.0 351,793 - RS_RS18460 0.74 +0.1 351,805 + RS_RS18460 0.74 +0.8 351,912 - RS_RS18460 0.81 +0.4 352,127 + +0.6 352,127 + -0.0 352,128 - -0.3 352,128 - +0.7 352,192 + +0.6 352,193 - -0.2 352,193 - +0.3 352,311 + +0.1 352,311 + -2.9 352,357 + +1.6 352,546 + -0.5 352,547 - +1.6 352,579 + -0.3 352,580 - -0.1 352,580 - +0.2 352,580 - -2.2 352,714 + RS_RS18465 0.17 -0.5 352,714 + RS_RS18465 0.17 -0.9 352,714 + RS_RS18465 0.17 +0.3 352,714 + RS_RS18465 0.17 +0.5 352,714 + RS_RS18465 0.17 +0.1 352,714 + RS_RS18465 0.17 -0.0 352,715 - RS_RS18465 0.17 +1.6 352,715 - RS_RS18465 0.17 +0.2 352,715 - RS_RS18465 0.17 +0.3 352,894 + RS_RS18465 0.32 +0.4 353,069 + RS_RS18465 0.46 -0.4
Or see this region's nucleotide sequence