Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS17085

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS17075 and RS_RS17080 overlap by 4 nucleotidesRS_RS17080 and RS_RS17085 overlap by 4 nucleotidesRS_RS17085 and RS_RS17090 are separated by 20 nucleotidesRS_RS17090 and RS_RS17095 are separated by 204 nucleotides RS_RS17075: RS_RS17075 - FAD-binding oxidoreductase, at 3,683,472 to 3,684,779 _RS17075 RS_RS17080: RS_RS17080 - amino acid ABC transporter ATP-binding protein, at 3,684,776 to 3,685,537 _RS17080 RS_RS17085: RS_RS17085 - ectoine/hydroxyectoine ABC transporter permease subunit EhuD, at 3,685,534 to 3,686,205 _RS17085 RS_RS17090: RS_RS17090 - amino acid ABC transporter substrate-binding protein, at 3,686,226 to 3,686,993 _RS17090 RS_RS17095: RS_RS17095 - IclR family transcriptional regulator, at 3,687,198 to 3,687,986 _RS17095 Position (kb) 3685 3686 3687Strain fitness (log2 ratio) -1 0 1 2at 3684.638 kb on - strand, within RS_RS17075at 3684.638 kb on - strand, within RS_RS17075at 3685.613 kb on + strand, within RS_RS17085at 3685.613 kb on + strand, within RS_RS17085at 3685.614 kb on - strand, within RS_RS17085at 3685.614 kb on - strand, within RS_RS17085at 3685.614 kb on - strand, within RS_RS17085at 3685.614 kb on - strand, within RS_RS17085at 3685.614 kb on - strand, within RS_RS17085at 3685.632 kb on + strand, within RS_RS17085at 3685.632 kb on + strand, within RS_RS17085at 3685.632 kb on + strand, within RS_RS17085at 3685.633 kb on - strand, within RS_RS17085at 3685.634 kb on + strand, within RS_RS17085at 3685.746 kb on + strand, within RS_RS17085at 3685.746 kb on + strand, within RS_RS17085at 3685.747 kb on - strand, within RS_RS17085at 3685.747 kb on - strand, within RS_RS17085at 3685.747 kb on - strand, within RS_RS17085at 3685.747 kb on - strand, within RS_RS17085at 3685.755 kb on - strand, within RS_RS17085at 3685.904 kb on + strand, within RS_RS17085at 3685.904 kb on + strand, within RS_RS17085at 3685.976 kb on + strand, within RS_RS17085at 3685.977 kb on - strand, within RS_RS17085at 3685.977 kb on - strand, within RS_RS17085at 3685.977 kb on - strand, within RS_RS17085at 3685.977 kb on - strand, within RS_RS17085at 3685.982 kb on + strand, within RS_RS17085at 3685.983 kb on - strand, within RS_RS17085at 3685.983 kb on - strand, within RS_RS17085at 3685.983 kb on - strand, within RS_RS17085at 3685.983 kb on - strand, within RS_RS17085at 3685.983 kb on - strand, within RS_RS17085at 3686.366 kb on - strand, within RS_RS17090at 3686.414 kb on - strand, within RS_RS17090at 3686.495 kb on - strand, within RS_RS17090at 3686.599 kb on + strand, within RS_RS17090at 3686.600 kb on - strand, within RS_RS17090at 3686.600 kb on - strand, within RS_RS17090at 3686.641 kb on + strand, within RS_RS17090at 3686.642 kb on - strand, within RS_RS17090at 3686.647 kb on + strand, within RS_RS17090at 3686.896 kb on + strand, within RS_RS17090at 3686.896 kb on + strand, within RS_RS17090at 3686.896 kb on + strand, within RS_RS17090at 3686.897 kb on - strand, within RS_RS17090at 3686.897 kb on - strand, within RS_RS17090at 3686.897 kb on - strand, within RS_RS17090at 3686.897 kb on - strand, within RS_RS17090at 3687.102 kb on + strandat 3687.102 kb on + strandat 3687.104 kb on + strandat 3687.105 kb on - strandat 3687.105 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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3,684,638 - RS_RS17075 0.89 +0.3
3,684,638 - RS_RS17075 0.89 -0.1
3,685,613 + RS_RS17085 0.12 +1.0
3,685,613 + RS_RS17085 0.12 +0.1
3,685,614 - RS_RS17085 0.12 +0.0
3,685,614 - RS_RS17085 0.12 +0.1
3,685,614 - RS_RS17085 0.12 +0.3
3,685,614 - RS_RS17085 0.12 +0.5
3,685,614 - RS_RS17085 0.12 +0.3
3,685,632 + RS_RS17085 0.15 -0.4
3,685,632 + RS_RS17085 0.15 +0.4
3,685,632 + RS_RS17085 0.15 +1.8
3,685,633 - RS_RS17085 0.15 +0.8
3,685,634 + RS_RS17085 0.15 -1.5
3,685,746 + RS_RS17085 0.32 +1.8
3,685,746 + RS_RS17085 0.32 -0.8
3,685,747 - RS_RS17085 0.32 +0.3
3,685,747 - RS_RS17085 0.32 -0.1
3,685,747 - RS_RS17085 0.32 +0.5
3,685,747 - RS_RS17085 0.32 +0.2
3,685,755 - RS_RS17085 0.33 +0.7
3,685,904 + RS_RS17085 0.55 -1.5
3,685,904 + RS_RS17085 0.55 -0.5
3,685,976 + RS_RS17085 0.66 -0.9
3,685,977 - RS_RS17085 0.66 +0.5
3,685,977 - RS_RS17085 0.66 -0.2
3,685,977 - RS_RS17085 0.66 -1.4
3,685,977 - RS_RS17085 0.66 -0.5
3,685,982 + RS_RS17085 0.67 -0.7
3,685,983 - RS_RS17085 0.67 -0.2
3,685,983 - RS_RS17085 0.67 +0.8
3,685,983 - RS_RS17085 0.67 +0.8
3,685,983 - RS_RS17085 0.67 +1.4
3,685,983 - RS_RS17085 0.67 -0.0
3,686,366 - RS_RS17090 0.18 -0.4
3,686,414 - RS_RS17090 0.24 +0.5
3,686,495 - RS_RS17090 0.35 -0.3
3,686,599 + RS_RS17090 0.49 +0.2
3,686,600 - RS_RS17090 0.49 -0.3
3,686,600 - RS_RS17090 0.49 -0.1
3,686,641 + RS_RS17090 0.54 +0.4
3,686,642 - RS_RS17090 0.54 -0.2
3,686,647 + RS_RS17090 0.55 +0.2
3,686,896 + RS_RS17090 0.87 -0.6
3,686,896 + RS_RS17090 0.87 +0.2
3,686,896 + RS_RS17090 0.87 -0.6
3,686,897 - RS_RS17090 0.87 +0.9
3,686,897 - RS_RS17090 0.87 -0.3
3,686,897 - RS_RS17090 0.87 -0.2
3,686,897 - RS_RS17090 0.87 +0.2
3,687,102 + +0.3
3,687,102 + -0.8
3,687,104 + -0.4
3,687,105 - +0.3
3,687,105 - -0.7

Or see this region's nucleotide sequence