Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS16620

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS16610 and RS_RS16615 are separated by 96 nucleotidesRS_RS16615 and RS_RS16620 are separated by 89 nucleotidesRS_RS16620 and RS_RS16625 are separated by 36 nucleotidesRS_RS16625 and RS_RS16630 are separated by 64 nucleotides RS_RS16610: RS_RS16610 - membrane protein, at 3,577,002 to 3,579,365 _RS16610 RS_RS16615: RS_RS16615 - ATP synthase epsilon chain 1, at 3,579,462 to 3,579,875 _RS16615 RS_RS16620: RS_RS16620 - ATP synthase subunit beta, at 3,579,965 to 3,581,368 _RS16620 RS_RS16625: RS_RS16625 - ATP synthase subunit gamma, at 3,581,405 to 3,582,280 _RS16625 RS_RS16630: RS_RS16630 - ATP synthase subunit alpha, at 3,582,345 to 3,583,886 _RS16630 Position (kb) 3579 3580 3581 3582Strain fitness (log2 ratio) -1 0 1at 3579.155 kb on - strandat 3579.155 kb on - strandat 3579.155 kb on - strandat 3579.241 kb on + strandat 3579.242 kb on - strandat 3579.389 kb on + strandat 3579.390 kb on - strandat 3579.967 kb on - strandat 3581.382 kb on - strandat 3581.382 kb on - strandat 3581.387 kb on - strandat 3581.387 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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3,579,155 - +0.6
3,579,155 - -0.4
3,579,155 - +0.1
3,579,241 + -0.4
3,579,242 - -0.5
3,579,389 + -0.5
3,579,390 - -0.5
3,579,967 - +0.8
3,581,382 - +0.3
3,581,382 - -0.2
3,581,387 - -0.8
3,581,387 - +0.1

Or see this region's nucleotide sequence