Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02165 and RS_RS02170 are separated by 1 nucleotides RS_RS02170 and RS_RS02175 are separated by 205 nucleotides RS_RS02175 and RS_RS02180 are separated by 69 nucleotides RS_RS02180 and RS_RS02185 are separated by 35 nucleotides
RS_RS02165: RS_RS02165 - membrane protein, at 465,294 to 465,707
_RS02165
RS_RS02170: RS_RS02170 - hypothetical protein, at 465,709 to 466,143
_RS02170
RS_RS02175: RS_RS02175 - alpha/beta hydrolase, at 466,349 to 467,302
_RS02175
RS_RS02180: RS_RS02180 - hypothetical protein, at 467,372 to 468,175
_RS02180
RS_RS02185: RS_RS02185 - gluconate kinase, at 468,211 to 468,720
_RS02185
Position (kb) 466
467
468 Strain fitness (log2 ratio) -1
0
1
2
3 at 465.846 kb on - strand, within RS_RS02170 at 466.177 kb on - strand at 466.317 kb on + strand at 466.586 kb on + strand, within RS_RS02175 at 466.587 kb on - strand, within RS_RS02175 at 466.989 kb on - strand, within RS_RS02175 at 467.039 kb on + strand, within RS_RS02175 at 467.075 kb on + strand, within RS_RS02175 at 467.075 kb on + strand, within RS_RS02175 at 467.076 kb on - strand, within RS_RS02175 at 467.076 kb on - strand, within RS_RS02175 at 467.209 kb on - strand at 467.549 kb on + strand, within RS_RS02180 at 467.549 kb on + strand, within RS_RS02180 at 467.549 kb on + strand, within RS_RS02180 at 467.705 kb on + strand, within RS_RS02180 at 467.706 kb on - strand, within RS_RS02180 at 467.864 kb on + strand, within RS_RS02180 at 467.964 kb on - strand, within RS_RS02180 at 467.978 kb on + strand, within RS_RS02180 at 467.978 kb on + strand, within RS_RS02180
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 465,846 - RS_RS02170 0.31 -1.3 466,177 - -1.2 466,317 + +0.7 466,586 + RS_RS02175 0.25 -0.3 466,587 - RS_RS02175 0.25 -0.5 466,989 - RS_RS02175 0.67 -1.0 467,039 + RS_RS02175 0.72 -0.3 467,075 + RS_RS02175 0.76 +3.3 467,075 + RS_RS02175 0.76 +0.3 467,076 - RS_RS02175 0.76 +0.7 467,076 - RS_RS02175 0.76 -0.1 467,209 - -0.1 467,549 + RS_RS02180 0.22 -0.3 467,549 + RS_RS02180 0.22 -0.3 467,549 + RS_RS02180 0.22 -0.3 467,705 + RS_RS02180 0.41 -0.7 467,706 - RS_RS02180 0.42 +0.1 467,864 + RS_RS02180 0.61 -0.7 467,964 - RS_RS02180 0.74 -0.2 467,978 + RS_RS02180 0.75 +0.7 467,978 + RS_RS02180 0.75 -1.3
Or see this region's nucleotide sequence