Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00655

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00650 and RS_RS00655 are separated by 309 nucleotidesRS_RS00655 and RS_RS00660 are separated by 72 nucleotides RS_RS00650: RS_RS00650 - AraC family transcriptional regulator, at 154,813 to 155,694 _RS00650 RS_RS00655: RS_RS00655 - GYD domain-containing protein, at 156,004 to 156,297 _RS00655 RS_RS00660: RS_RS00660 - S-adenosylmethionine synthase, at 156,370 to 157,560 _RS00660 Position (kb) 156 157Strain fitness (log2 ratio) -1 0 1 2at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.132 kb on + strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.133 kb on - strand, within RS_RS00650at 155.329 kb on + strand, within RS_RS00650at 155.329 kb on + strand, within RS_RS00650at 155.329 kb on + strand, within RS_RS00650at 155.330 kb on - strand, within RS_RS00650at 155.330 kb on - strand, within RS_RS00650at 155.330 kb on - strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.522 kb on + strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.523 kb on - strand, within RS_RS00650at 155.673 kb on - strandat 155.970 kb on + strandat 156.148 kb on + strand, within RS_RS00655at 156.148 kb on + strand, within RS_RS00655at 156.148 kb on + strand, within RS_RS00655at 156.319 kb on + strandat 156.319 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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155,132 + RS_RS00650 0.36 +0.3
155,132 + RS_RS00650 0.36 +0.2
155,132 + RS_RS00650 0.36 -0.1
155,132 + RS_RS00650 0.36 -0.3
155,132 + RS_RS00650 0.36 -1.0
155,133 - RS_RS00650 0.36 +0.8
155,133 - RS_RS00650 0.36 -0.6
155,133 - RS_RS00650 0.36 +0.2
155,133 - RS_RS00650 0.36 +0.8
155,329 + RS_RS00650 0.59 -0.3
155,329 + RS_RS00650 0.59 +1.8
155,329 + RS_RS00650 0.59 +0.4
155,330 - RS_RS00650 0.59 +0.1
155,330 - RS_RS00650 0.59 -0.8
155,330 - RS_RS00650 0.59 -0.9
155,522 + RS_RS00650 0.80 -1.1
155,522 + RS_RS00650 0.80 -0.7
155,522 + RS_RS00650 0.80 +0.1
155,522 + RS_RS00650 0.80 -0.5
155,522 + RS_RS00650 0.80 -0.3
155,522 + RS_RS00650 0.80 +1.1
155,523 - RS_RS00650 0.80 -1.2
155,523 - RS_RS00650 0.80 -0.3
155,523 - RS_RS00650 0.80 +0.2
155,523 - RS_RS00650 0.80 -0.5
155,523 - RS_RS00650 0.80 -0.8
155,673 - -0.2
155,970 + +0.8
156,148 + RS_RS00655 0.49 -0.7
156,148 + RS_RS00655 0.49 -0.0
156,148 + RS_RS00655 0.49 -0.8
156,319 + +1.5
156,319 + -0.1

Or see this region's nucleotide sequence