Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS22655

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS22650 and RS_RS22655 are separated by 103 nucleotidesRS_RS22655 and RS_RS22660 are separated by 31 nucleotides RS_RS22650: RS_RS22650 - LysR family transcriptional regulator, at 1,446,003 to 1,446,899 _RS22650 RS_RS22655: RS_RS22655 - NADPH-dependent F420 reductase, at 1,447,003 to 1,447,629 _RS22655 RS_RS22660: RS_RS22660 - alpha/beta hydrolase, at 1,447,661 to 1,448,752 _RS22660 Position (kb) 1447 1448Strain fitness (log2 ratio) -2 -1 0 1 2at 1446.090 kb on + strandat 1446.090 kb on + strandat 1446.319 kb on + strand, within RS_RS22650at 1446.484 kb on + strand, within RS_RS22650at 1446.484 kb on + strand, within RS_RS22650at 1446.485 kb on - strand, within RS_RS22650at 1446.559 kb on + strand, within RS_RS22650at 1446.559 kb on + strand, within RS_RS22650at 1446.559 kb on + strand, within RS_RS22650at 1446.560 kb on - strand, within RS_RS22650at 1446.560 kb on - strand, within RS_RS22650at 1446.703 kb on + strand, within RS_RS22650at 1446.703 kb on + strand, within RS_RS22650at 1446.704 kb on - strand, within RS_RS22650at 1446.704 kb on - strand, within RS_RS22650at 1446.907 kb on - strandat 1447.190 kb on + strand, within RS_RS22655at 1447.204 kb on + strand, within RS_RS22655at 1447.619 kb on + strandat 1447.620 kb on - strandat 1447.653 kb on - strandat 1447.653 kb on - strandat 1447.829 kb on - strand, within RS_RS22660at 1447.862 kb on + strand, within RS_RS22660at 1447.863 kb on - strand, within RS_RS22660at 1447.928 kb on + strand, within RS_RS22660at 1447.928 kb on + strand, within RS_RS22660at 1447.928 kb on + strand, within RS_RS22660at 1447.929 kb on - strand, within RS_RS22660at 1447.943 kb on + strand, within RS_RS22660at 1447.943 kb on + strand, within RS_RS22660at 1447.943 kb on + strand, within RS_RS22660at 1447.943 kb on + strand, within RS_RS22660at 1447.943 kb on + strand, within RS_RS22660at 1447.943 kb on + strand, within RS_RS22660at 1447.944 kb on - strand, within RS_RS22660at 1447.944 kb on - strand, within RS_RS22660at 1447.961 kb on + strand, within RS_RS22660at 1447.962 kb on - strand, within RS_RS22660at 1447.970 kb on + strand, within RS_RS22660at 1447.970 kb on + strand, within RS_RS22660at 1447.970 kb on + strand, within RS_RS22660at 1447.970 kb on + strand, within RS_RS22660at 1447.970 kb on + strand, within RS_RS22660at 1447.970 kb on + strand, within RS_RS22660at 1447.970 kb on + strand, within RS_RS22660at 1447.970 kb on + strand, within RS_RS22660at 1447.970 kb on + strand, within RS_RS22660at 1447.970 kb on + strand, within RS_RS22660at 1447.971 kb on - strand, within RS_RS22660at 1447.971 kb on - strand, within RS_RS22660at 1447.974 kb on + strand, within RS_RS22660at 1447.974 kb on + strand, within RS_RS22660at 1447.974 kb on + strand, within RS_RS22660at 1447.975 kb on - strand, within RS_RS22660at 1447.975 kb on - strand, within RS_RS22660at 1447.975 kb on - strand, within RS_RS22660at 1448.015 kb on + strand, within RS_RS22660at 1448.016 kb on - strand, within RS_RS22660at 1448.091 kb on - strand, within RS_RS22660at 1448.129 kb on + strand, within RS_RS22660at 1448.129 kb on + strand, within RS_RS22660at 1448.129 kb on + strand, within RS_RS22660at 1448.129 kb on + strand, within RS_RS22660at 1448.129 kb on + strand, within RS_RS22660at 1448.129 kb on + strand, within RS_RS22660at 1448.129 kb on + strand, within RS_RS22660at 1448.130 kb on - strand, within RS_RS22660at 1448.130 kb on - strand, within RS_RS22660at 1448.130 kb on - strand, within RS_RS22660at 1448.130 kb on - strand, within RS_RS22660at 1448.130 kb on - strand, within RS_RS22660at 1448.130 kb on - strand, within RS_RS22660at 1448.131 kb on + strand, within RS_RS22660at 1448.357 kb on + strand, within RS_RS22660at 1448.357 kb on + strand, within RS_RS22660at 1448.358 kb on - strand, within RS_RS22660at 1448.358 kb on - strand, within RS_RS22660at 1448.479 kb on - strand, within RS_RS22660at 1448.504 kb on + strand, within RS_RS22660at 1448.504 kb on + strand, within RS_RS22660at 1448.505 kb on - strand, within RS_RS22660at 1448.539 kb on + strand, within RS_RS22660at 1448.539 kb on + strand, within RS_RS22660at 1448.539 kb on + strand, within RS_RS22660at 1448.539 kb on + strand, within RS_RS22660at 1448.540 kb on - strand, within RS_RS22660at 1448.540 kb on - strand, within RS_RS22660at 1448.540 kb on - strand, within RS_RS22660at 1448.570 kb on + strand, within RS_RS22660at 1448.571 kb on - strand, within RS_RS22660

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,446,090 + -0.4
1,446,090 + -1.0
1,446,319 + RS_RS22650 0.35 -1.4
1,446,484 + RS_RS22650 0.54 -0.9
1,446,484 + RS_RS22650 0.54 +0.4
1,446,485 - RS_RS22650 0.54 +1.0
1,446,559 + RS_RS22650 0.62 -0.6
1,446,559 + RS_RS22650 0.62 +1.4
1,446,559 + RS_RS22650 0.62 -1.4
1,446,560 - RS_RS22650 0.62 -0.2
1,446,560 - RS_RS22650 0.62 +1.4
1,446,703 + RS_RS22650 0.78 +0.2
1,446,703 + RS_RS22650 0.78 -0.4
1,446,704 - RS_RS22650 0.78 -1.1
1,446,704 - RS_RS22650 0.78 +1.4
1,446,907 - +0.8
1,447,190 + RS_RS22655 0.30 -1.7
1,447,204 + RS_RS22655 0.32 -0.7
1,447,619 + -0.2
1,447,620 - -0.6
1,447,653 - +0.0
1,447,653 - -0.6
1,447,829 - RS_RS22660 0.15 +0.0
1,447,862 + RS_RS22660 0.18 +2.4
1,447,863 - RS_RS22660 0.18 +0.4
1,447,928 + RS_RS22660 0.24 +0.8
1,447,928 + RS_RS22660 0.24 +0.8
1,447,928 + RS_RS22660 0.24 +1.4
1,447,929 - RS_RS22660 0.25 -1.2
1,447,943 + RS_RS22660 0.26 +0.8
1,447,943 + RS_RS22660 0.26 +0.4
1,447,943 + RS_RS22660 0.26 +0.5
1,447,943 + RS_RS22660 0.26 +2.4
1,447,943 + RS_RS22660 0.26 +0.0
1,447,943 + RS_RS22660 0.26 -1.3
1,447,944 - RS_RS22660 0.26 +2.4
1,447,944 - RS_RS22660 0.26 +0.4
1,447,961 + RS_RS22660 0.27 -0.2
1,447,962 - RS_RS22660 0.28 -0.0
1,447,970 + RS_RS22660 0.28 +1.4
1,447,970 + RS_RS22660 0.28 +0.0
1,447,970 + RS_RS22660 0.28 -0.2
1,447,970 + RS_RS22660 0.28 -0.4
1,447,970 + RS_RS22660 0.28 -0.1
1,447,970 + RS_RS22660 0.28 -0.4
1,447,970 + RS_RS22660 0.28 -1.8
1,447,970 + RS_RS22660 0.28 +0.2
1,447,970 + RS_RS22660 0.28 -0.6
1,447,970 + RS_RS22660 0.28 -0.0
1,447,971 - RS_RS22660 0.28 -1.5
1,447,971 - RS_RS22660 0.28 +1.4
1,447,974 + RS_RS22660 0.29 +0.4
1,447,974 + RS_RS22660 0.29 -1.2
1,447,974 + RS_RS22660 0.29 +2.4
1,447,975 - RS_RS22660 0.29 +0.9
1,447,975 - RS_RS22660 0.29 -2.3
1,447,975 - RS_RS22660 0.29 -0.4
1,448,015 + RS_RS22660 0.32 -2.4
1,448,016 - RS_RS22660 0.33 -0.3
1,448,091 - RS_RS22660 0.39 -0.5
1,448,129 + RS_RS22660 0.43 -1.1
1,448,129 + RS_RS22660 0.43 -0.2
1,448,129 + RS_RS22660 0.43 -1.9
1,448,129 + RS_RS22660 0.43 -0.7
1,448,129 + RS_RS22660 0.43 -0.2
1,448,129 + RS_RS22660 0.43 -0.1
1,448,129 + RS_RS22660 0.43 -0.2
1,448,130 - RS_RS22660 0.43 -0.7
1,448,130 - RS_RS22660 0.43 -1.0
1,448,130 - RS_RS22660 0.43 -2.0
1,448,130 - RS_RS22660 0.43 +0.0
1,448,130 - RS_RS22660 0.43 +0.0
1,448,130 - RS_RS22660 0.43 -0.9
1,448,131 + RS_RS22660 0.43 +0.8
1,448,357 + RS_RS22660 0.64 -2.0
1,448,357 + RS_RS22660 0.64 -1.0
1,448,358 - RS_RS22660 0.64 +0.8
1,448,358 - RS_RS22660 0.64 -0.4
1,448,479 - RS_RS22660 0.75 -0.4
1,448,504 + RS_RS22660 0.77 +0.8
1,448,504 + RS_RS22660 0.77 -0.3
1,448,505 - RS_RS22660 0.77 -1.4
1,448,539 + RS_RS22660 0.80 -1.3
1,448,539 + RS_RS22660 0.80 -0.1
1,448,539 + RS_RS22660 0.80 +0.4
1,448,539 + RS_RS22660 0.80 -0.5
1,448,540 - RS_RS22660 0.80 -0.9
1,448,540 - RS_RS22660 0.80 -0.1
1,448,540 - RS_RS22660 0.80 -2.0
1,448,570 + RS_RS22660 0.83 -0.8
1,448,571 - RS_RS22660 0.83 +0.8

Or see this region's nucleotide sequence