Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03060

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS03055 and RS_RS03060 are separated by 15 nucleotidesRS_RS03060 and RS_RS03065 overlap by 20 nucleotidesRS_RS03065 and RS_RS03070 overlap by 4 nucleotides RS_RS03055: RS_RS03055 - hypothetical protein, at 656,848 to 657,765 _RS03055 RS_RS03060: RS_RS03060 - FMN-binding protein, at 657,781 to 658,296 _RS03060 RS_RS03065: RS_RS03065 - FAD:protein FMN transferase, at 658,277 to 659,173 _RS03065 RS_RS03070: RS_RS03070 - hypothetical protein, at 659,170 to 659,748 _RS03070 Position (kb) 657 658 659Strain fitness (log2 ratio) -2 -1 0 1 2at 656.806 kb on + strandat 656.807 kb on - strandat 656.944 kb on + strand, within RS_RS03055at 656.945 kb on - strand, within RS_RS03055at 656.950 kb on + strand, within RS_RS03055at 657.031 kb on + strand, within RS_RS03055at 657.032 kb on - strand, within RS_RS03055at 657.064 kb on + strand, within RS_RS03055at 657.065 kb on - strand, within RS_RS03055at 657.098 kb on - strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.106 kb on + strand, within RS_RS03055at 657.107 kb on - strand, within RS_RS03055at 657.107 kb on - strand, within RS_RS03055at 657.139 kb on + strand, within RS_RS03055at 657.242 kb on - strand, within RS_RS03055at 657.260 kb on - strand, within RS_RS03055at 657.261 kb on + strand, within RS_RS03055at 657.262 kb on - strand, within RS_RS03055at 657.286 kb on + strand, within RS_RS03055at 657.286 kb on + strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.287 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.542 kb on - strand, within RS_RS03055at 657.550 kb on + strand, within RS_RS03055at 657.551 kb on - strand, within RS_RS03055at 657.551 kb on - strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.583 kb on + strand, within RS_RS03055at 657.584 kb on - strand, within RS_RS03055at 657.584 kb on - strand, within RS_RS03055at 657.731 kb on - strandat 657.755 kb on - strandat 657.757 kb on + strandat 657.757 kb on + strandat 657.800 kb on + strandat 657.835 kb on + strand, within RS_RS03060at 657.836 kb on - strand, within RS_RS03060at 657.836 kb on - strand, within RS_RS03060at 657.847 kb on + strand, within RS_RS03060at 657.847 kb on + strand, within RS_RS03060at 657.848 kb on - strand, within RS_RS03060at 657.848 kb on - strand, within RS_RS03060at 658.126 kb on + strand, within RS_RS03060at 658.242 kb on + strand, within RS_RS03060at 658.276 kb on + strandat 658.276 kb on + strandat 658.276 kb on + strandat 658.276 kb on + strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.277 kb on - strandat 658.294 kb on + strandat 658.502 kb on + strand, within RS_RS03065at 658.503 kb on - strand, within RS_RS03065at 659.240 kb on - strand, within RS_RS03070at 659.240 kb on - strand, within RS_RS03070

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
656,806 + -0.3
656,807 - -0.7
656,944 + RS_RS03055 0.10 -1.2
656,945 - RS_RS03055 0.11 -0.3
656,950 + RS_RS03055 0.11 -0.9
657,031 + RS_RS03055 0.20 +0.1
657,032 - RS_RS03055 0.20 +2.6
657,064 + RS_RS03055 0.24 +0.2
657,065 - RS_RS03055 0.24 +0.9
657,098 - RS_RS03055 0.27 +2.6
657,106 + RS_RS03055 0.28 +1.0
657,106 + RS_RS03055 0.28 -0.3
657,106 + RS_RS03055 0.28 +2.1
657,106 + RS_RS03055 0.28 -1.0
657,106 + RS_RS03055 0.28 +1.4
657,107 - RS_RS03055 0.28 -1.4
657,107 - RS_RS03055 0.28 -0.4
657,139 + RS_RS03055 0.32 -0.4
657,242 - RS_RS03055 0.43 +0.6
657,260 - RS_RS03055 0.45 +0.4
657,261 + RS_RS03055 0.45 -0.3
657,262 - RS_RS03055 0.45 -0.8
657,286 + RS_RS03055 0.48 -1.8
657,286 + RS_RS03055 0.48 +1.1
657,287 - RS_RS03055 0.48 +0.5
657,287 - RS_RS03055 0.48 +0.2
657,287 - RS_RS03055 0.48 -0.8
657,287 - RS_RS03055 0.48 -0.3
657,542 - RS_RS03055 0.76 -0.4
657,542 - RS_RS03055 0.76 +0.4
657,542 - RS_RS03055 0.76 +1.6
657,550 + RS_RS03055 0.76 -0.1
657,551 - RS_RS03055 0.77 +0.3
657,551 - RS_RS03055 0.77 +0.1
657,583 + RS_RS03055 0.80 +0.4
657,583 + RS_RS03055 0.80 -1.8
657,583 + RS_RS03055 0.80 -0.4
657,583 + RS_RS03055 0.80 -0.4
657,584 - RS_RS03055 0.80 +1.0
657,584 - RS_RS03055 0.80 +1.1
657,731 - -0.3
657,755 - -0.7
657,757 + -0.7
657,757 + +1.0
657,800 + -0.5
657,835 + RS_RS03060 0.10 -0.4
657,836 - RS_RS03060 0.11 +1.0
657,836 - RS_RS03060 0.11 +2.6
657,847 + RS_RS03060 0.13 +1.6
657,847 + RS_RS03060 0.13 -0.2
657,848 - RS_RS03060 0.13 -0.1
657,848 - RS_RS03060 0.13 +0.6
658,126 + RS_RS03060 0.67 +0.4
658,242 + RS_RS03060 0.89 +1.0
658,276 + +1.0
658,276 + +0.8
658,276 + -1.2
658,276 + -0.6
658,277 - +1.6
658,277 - -0.2
658,277 - +0.5
658,277 - +2.6
658,294 + -0.0
658,502 + RS_RS03065 0.25 -0.6
658,503 - RS_RS03065 0.25 +1.6
659,240 - RS_RS03070 0.12 +0.7
659,240 - RS_RS03070 0.12 +1.0

Or see this region's nucleotide sequence