Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02665 and RS_RS02670 are separated by 45 nucleotides RS_RS02670 and RS_RS02675 are separated by 132 nucleotides RS_RS02675 and RS_RS02680 are separated by 10 nucleotides
RS_RS02665: RS_RS02665 - DUF1571 domain-containing protein, at 573,436 to 574,332
_RS02665
RS_RS02670: RS_RS02670 - long-chain fatty acid--CoA ligase, at 574,378 to 576,103
_RS02670
RS_RS02675: RS_RS02675 - hypothetical protein, at 576,236 to 576,649
_RS02675
RS_RS02680: RS_RS02680 - 3-oxoacyl-ACP reductase, at 576,660 to 578,072
_RS02680
Position (kb) 574
575
576
577 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 573.411 kb on + strand at 573.411 kb on + strand at 573.584 kb on + strand, within RS_RS02665 at 573.585 kb on - strand, within RS_RS02665 at 573.585 kb on - strand, within RS_RS02665 at 573.741 kb on + strand, within RS_RS02665 at 573.742 kb on - strand, within RS_RS02665 at 574.032 kb on - strand, within RS_RS02665 at 574.037 kb on + strand, within RS_RS02665 at 574.506 kb on - strand at 574.506 kb on - strand at 574.506 kb on - strand at 574.680 kb on - strand, within RS_RS02670 at 574.737 kb on - strand, within RS_RS02670 at 575.018 kb on - strand, within RS_RS02670 at 575.023 kb on - strand, within RS_RS02670 at 575.023 kb on - strand, within RS_RS02670 at 575.300 kb on + strand, within RS_RS02670 at 575.301 kb on - strand, within RS_RS02670 at 575.430 kb on + strand, within RS_RS02670 at 575.430 kb on + strand, within RS_RS02670 at 575.430 kb on + strand at 575.431 kb on - strand, within RS_RS02670 at 575.431 kb on - strand, within RS_RS02670 at 575.817 kb on + strand, within RS_RS02670 at 576.338 kb on + strand, within RS_RS02675 at 576.947 kb on - strand, within RS_RS02680 at 576.947 kb on - strand, within RS_RS02680 at 576.947 kb on - strand, within RS_RS02680
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 573,411 + -1.9 573,411 + +0.7 573,584 + RS_RS02665 0.16 -0.0 573,585 - RS_RS02665 0.17 -0.4 573,585 - RS_RS02665 0.17 +0.2 573,741 + RS_RS02665 0.34 -1.8 573,742 - RS_RS02665 0.34 +2.6 574,032 - RS_RS02665 0.66 -0.2 574,037 + RS_RS02665 0.67 -0.2 574,506 - +0.6 574,506 - -0.4 574,506 - +0.6 574,680 - RS_RS02670 0.17 +0.2 574,737 - RS_RS02670 0.21 +0.2 575,018 - RS_RS02670 0.37 -0.9 575,023 - RS_RS02670 0.37 -1.8 575,023 - RS_RS02670 0.37 +0.4 575,300 + RS_RS02670 0.53 -3.3 575,301 - RS_RS02670 0.53 +1.0 575,430 + RS_RS02670 0.61 -0.8 575,430 + RS_RS02670 0.61 -0.6 575,430 + +2.6 575,431 - RS_RS02670 0.61 +2.6 575,431 - RS_RS02670 0.61 +0.3 575,817 + RS_RS02670 0.83 -0.6 576,338 + RS_RS02675 0.25 -0.8 576,947 - RS_RS02680 0.20 +0.3 576,947 - RS_RS02680 0.20 +1.1 576,947 - RS_RS02680 0.20 -0.3
Or see this region's nucleotide sequence