Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS02625

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS02620 and RS_RS02625 are separated by 153 nucleotidesRS_RS02625 and RS_RS02630 are separated by 79 nucleotides RS_RS02620: RS_RS02620 - glycine--tRNA ligase subunit alpha, at 564,077 to 565,054 _RS02620 RS_RS02625: RS_RS02625 - apolipoprotein N-acyltransferase, at 565,208 to 566,719 _RS02625 RS_RS02630: RS_RS02630 - HlyC/CorC family transporter, at 566,799 to 567,695 _RS02630 Position (kb) 565 566 567Strain fitness (log2 ratio) -1 0 1 2at 567.121 kb on + strand, within RS_RS02630at 567.194 kb on - strand, within RS_RS02630at 567.326 kb on - strand, within RS_RS02630at 567.714 kb on + strandat 567.715 kb on - strandat 567.715 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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567,121 + RS_RS02630 0.36 -1.2
567,194 - RS_RS02630 0.44 -0.2
567,326 - RS_RS02630 0.59 -0.8
567,714 + +2.6
567,715 - +0.3
567,715 - -0.2

Or see this region's nucleotide sequence