Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23835

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS23825 and RS_RS23830 are separated by 30 nucleotidesRS_RS23830 and RS_RS23835 are separated by 9 nucleotidesRS_RS23835 and RS_RS23840 are separated by 15 nucleotides RS_RS23825: RS_RS23825 - MBL fold metallo-hydrolase, at 1,749,486 to 1,750,574 _RS23825 RS_RS23830: RS_RS23830 - RNA polymerase sigma factor FliA, at 1,750,605 to 1,751,366 _RS23830 RS_RS23835: RS_RS23835 - hypothetical protein, at 1,751,376 to 1,752,143 _RS23835 RS_RS23840: RS_RS23840 - flagellar biosynthesis protein FlhF, at 1,752,159 to 1,754,006 _RS23840 Position (kb) 1751 1752 1753Strain fitness (log2 ratio) -2 -1 0 1 2at 1750.572 kb on + strandat 1750.744 kb on + strand, within RS_RS23830at 1750.745 kb on - strand, within RS_RS23830at 1750.747 kb on + strand, within RS_RS23830at 1750.909 kb on + strand, within RS_RS23830at 1750.910 kb on - strand, within RS_RS23830at 1750.910 kb on - strand, within RS_RS23830at 1750.912 kb on + strand, within RS_RS23830at 1750.912 kb on + strand, within RS_RS23830at 1750.912 kb on + strand, within RS_RS23830at 1750.913 kb on - strand, within RS_RS23830at 1750.913 kb on - strand, within RS_RS23830at 1751.138 kb on - strand, within RS_RS23830at 1751.332 kb on + strandat 1751.332 kb on + strandat 1751.332 kb on + strandat 1751.332 kb on + strandat 1751.332 kb on + strandat 1751.332 kb on + strandat 1751.333 kb on - strandat 1751.333 kb on - strandat 1751.333 kb on - strandat 1751.333 kb on - strandat 1751.333 kb on - strandat 1751.333 kb on - strandat 1751.333 kb on - strandat 1751.380 kb on + strandat 1751.418 kb on - strandat 1751.622 kb on - strand, within RS_RS23835at 1751.641 kb on + strand, within RS_RS23835at 1751.641 kb on + strand, within RS_RS23835at 1751.806 kb on + strand, within RS_RS23835at 1751.806 kb on + strand, within RS_RS23835at 1751.990 kb on + strand, within RS_RS23835at 1752.337 kb on + strandat 1752.346 kb on + strand, within RS_RS23840at 1752.691 kb on + strand, within RS_RS23840at 1752.692 kb on - strand, within RS_RS23840at 1752.931 kb on + strand, within RS_RS23840at 1752.931 kb on + strand, within RS_RS23840at 1752.931 kb on + strand, within RS_RS23840at 1752.931 kb on + strand, within RS_RS23840at 1752.931 kb on + strand, within RS_RS23840at 1752.931 kb on + strand, within RS_RS23840at 1752.932 kb on - strand, within RS_RS23840at 1752.932 kb on - strand, within RS_RS23840at 1752.964 kb on + strand, within RS_RS23840at 1752.964 kb on + strand, within RS_RS23840

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,750,572 + +0.8
1,750,744 + RS_RS23830 0.18 -1.6
1,750,745 - RS_RS23830 0.18 +0.2
1,750,747 + RS_RS23830 0.19 +0.1
1,750,909 + RS_RS23830 0.40 +0.2
1,750,910 - RS_RS23830 0.40 +1.3
1,750,910 - RS_RS23830 0.40 -0.9
1,750,912 + RS_RS23830 0.40 -1.2
1,750,912 + RS_RS23830 0.40 -0.8
1,750,912 + RS_RS23830 0.40 -0.5
1,750,913 - RS_RS23830 0.40 +1.8
1,750,913 - RS_RS23830 0.40 +0.2
1,751,138 - RS_RS23830 0.70 -0.5
1,751,332 + +0.1
1,751,332 + -0.5
1,751,332 + -0.0
1,751,332 + +0.3
1,751,332 + -0.5
1,751,332 + -0.1
1,751,333 - -1.5
1,751,333 - +1.8
1,751,333 - -0.2
1,751,333 - +0.2
1,751,333 - -0.5
1,751,333 - +1.0
1,751,333 - -0.2
1,751,380 + +0.8
1,751,418 - -2.1
1,751,622 - RS_RS23835 0.32 +0.2
1,751,641 + RS_RS23835 0.35 -0.0
1,751,641 + RS_RS23835 0.35 +0.2
1,751,806 + RS_RS23835 0.56 -1.0
1,751,806 + RS_RS23835 0.56 -0.4
1,751,990 + RS_RS23835 0.80 +1.8
1,752,337 + -0.0
1,752,346 + RS_RS23840 0.10 -1.4
1,752,691 + RS_RS23840 0.29 +0.2
1,752,692 - RS_RS23840 0.29 +0.2
1,752,931 + RS_RS23840 0.42 -0.0
1,752,931 + RS_RS23840 0.42 +0.2
1,752,931 + RS_RS23840 0.42 +0.9
1,752,931 + RS_RS23840 0.42 +0.2
1,752,931 + RS_RS23840 0.42 -1.4
1,752,931 + RS_RS23840 0.42 -0.8
1,752,932 - RS_RS23840 0.42 +0.8
1,752,932 - RS_RS23840 0.42 +0.8
1,752,964 + RS_RS23840 0.44 +0.5
1,752,964 + RS_RS23840 0.44 +0.5

Or see this region's nucleotide sequence