Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19275 and RS_RS19280 overlap by 4 nucleotides RS_RS19280 and RS_RS19285 are separated by 210 nucleotides RS_RS19285 and RS_RS19290 are separated by 72 nucleotides
RS_RS19275: RS_RS19275 - MFS transporter, at 552,820 to 554,439
_RS19275
RS_RS19280: RS_RS19280 - TolC family protein, at 554,436 to 555,923
_RS19280
RS_RS19285: RS_RS19285 - TetR family transcriptional regulator, at 556,134 to 556,763
_RS19285
RS_RS19290: RS_RS19290 - pirin family protein, at 556,836 to 557,573
_RS19290
Position (kb) 554
555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 553.856 kb on + strand, within RS_RS19275 at 554.199 kb on - strand, within RS_RS19275 at 554.623 kb on + strand, within RS_RS19280 at 554.623 kb on + strand, within RS_RS19280 at 554.623 kb on + strand, within RS_RS19280 at 554.707 kb on + strand, within RS_RS19280 at 554.708 kb on - strand, within RS_RS19280 at 554.842 kb on + strand, within RS_RS19280 at 554.842 kb on + strand, within RS_RS19280 at 554.842 kb on + strand, within RS_RS19280 at 554.842 kb on + strand, within RS_RS19280 at 554.842 kb on + strand, within RS_RS19280 at 554.843 kb on - strand, within RS_RS19280 at 554.843 kb on - strand, within RS_RS19280 at 554.843 kb on - strand, within RS_RS19280 at 554.945 kb on - strand, within RS_RS19280 at 554.945 kb on - strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.343 kb on + strand, within RS_RS19280 at 555.344 kb on - strand, within RS_RS19280 at 555.349 kb on + strand, within RS_RS19280 at 555.350 kb on - strand, within RS_RS19280 at 555.909 kb on - strand at 555.911 kb on + strand at 555.911 kb on + strand at 555.912 kb on - strand at 555.923 kb on + strand at 555.923 kb on + strand at 555.923 kb on + strand at 556.027 kb on + strand at 556.027 kb on + strand at 556.027 kb on + strand at 556.027 kb on + strand at 556.027 kb on + strand at 556.027 kb on + strand at 556.027 kb on + strand at 556.027 kb on + strand at 556.028 kb on - strand at 556.028 kb on - strand at 556.028 kb on - strand at 556.028 kb on - strand at 556.028 kb on - strand at 556.279 kb on - strand, within RS_RS19285 at 556.279 kb on - strand, within RS_RS19285 at 556.279 kb on - strand, within RS_RS19285 at 556.416 kb on + strand, within RS_RS19285 at 556.416 kb on + strand, within RS_RS19285 at 556.416 kb on + strand, within RS_RS19285 at 556.417 kb on - strand, within RS_RS19285 at 556.455 kb on + strand, within RS_RS19285 at 556.455 kb on + strand, within RS_RS19285 at 556.509 kb on + strand, within RS_RS19285 at 556.509 kb on + strand, within RS_RS19285 at 556.510 kb on - strand, within RS_RS19285 at 556.510 kb on - strand, within RS_RS19285
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 553,856 + RS_RS19275 0.64 -1.0 554,199 - RS_RS19275 0.85 -0.8 554,623 + RS_RS19280 0.13 -0.8 554,623 + RS_RS19280 0.13 -0.9 554,623 + RS_RS19280 0.13 -2.1 554,707 + RS_RS19280 0.18 +0.8 554,708 - RS_RS19280 0.18 +0.2 554,842 + RS_RS19280 0.27 +0.2 554,842 + RS_RS19280 0.27 -0.8 554,842 + RS_RS19280 0.27 +0.8 554,842 + RS_RS19280 0.27 -1.4 554,842 + RS_RS19280 0.27 +0.3 554,843 - RS_RS19280 0.27 +0.3 554,843 - RS_RS19280 0.27 +0.2 554,843 - RS_RS19280 0.27 +0.5 554,945 - RS_RS19280 0.34 -0.6 554,945 - RS_RS19280 0.34 -0.2 555,343 + RS_RS19280 0.61 -0.2 555,343 + RS_RS19280 0.61 -1.0 555,343 + RS_RS19280 0.61 -0.7 555,343 + RS_RS19280 0.61 +0.3 555,343 + RS_RS19280 0.61 -0.8 555,343 + RS_RS19280 0.61 -2.0 555,344 - RS_RS19280 0.61 -0.9 555,349 + RS_RS19280 0.61 -1.2 555,350 - RS_RS19280 0.61 -0.0 555,909 - +0.5 555,911 + -1.0 555,911 + -0.8 555,912 - +0.5 555,923 + +0.3 555,923 + -1.0 555,923 + +1.0 556,027 + -1.5 556,027 + +1.8 556,027 + -0.4 556,027 + -0.9 556,027 + -1.9 556,027 + -1.5 556,027 + +0.8 556,027 + +0.9 556,028 - -0.7 556,028 - -0.4 556,028 - -0.5 556,028 - +0.8 556,028 - -0.1 556,279 - RS_RS19285 0.23 -1.3 556,279 - RS_RS19285 0.23 +0.8 556,279 - RS_RS19285 0.23 +0.2 556,416 + RS_RS19285 0.45 +0.8 556,416 + RS_RS19285 0.45 -0.2 556,416 + RS_RS19285 0.45 -0.1 556,417 - RS_RS19285 0.45 -0.8 556,455 + RS_RS19285 0.51 -0.2 556,455 + RS_RS19285 0.51 -1.1 556,509 + RS_RS19285 0.60 -1.4 556,509 + RS_RS19285 0.60 -0.8 556,510 - RS_RS19285 0.60 +0.1 556,510 - RS_RS19285 0.60 -0.8
Or see this region's nucleotide sequence