Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS18295

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS18290 and RS_RS18295 overlap by 4 nucleotidesRS_RS18295 and RS_RS18300 overlap by 4 nucleotides RS_RS18290: RS_RS18290 - 4-alpha-glucanotransferase, at 296,140 to 298,464 _RS18290 RS_RS18295: RS_RS18295 - malto-oligosyltrehalose trehalohydrolase, at 298,461 to 300,329 _RS18295 RS_RS18300: RS_RS18300 - glycogen debranching enzyme GlgX, at 300,326 to 302,590 _RS18300 Position (kb) 298 299 300 301Strain fitness (log2 ratio) -1 0 1 2at 297.891 kb on - strand, within RS_RS18290at 297.891 kb on - strand, within RS_RS18290at 297.965 kb on + strand, within RS_RS18290at 297.965 kb on + strand, within RS_RS18290at 298.973 kb on - strand, within RS_RS18295at 298.973 kb on - strand, within RS_RS18295at 299.221 kb on + strand, within RS_RS18295at 299.221 kb on + strand, within RS_RS18295at 299.284 kb on + strand, within RS_RS18295at 299.284 kb on + strand, within RS_RS18295at 299.284 kb on + strand, within RS_RS18295at 299.285 kb on - strand, within RS_RS18295at 299.288 kb on - strand, within RS_RS18295at 299.288 kb on - strand, within RS_RS18295at 299.288 kb on - strand, within RS_RS18295at 299.545 kb on + strand, within RS_RS18295at 299.545 kb on + strand, within RS_RS18295at 299.545 kb on + strand, within RS_RS18295at 299.546 kb on - strand, within RS_RS18295at 299.674 kb on + strand, within RS_RS18295at 299.675 kb on - strand, within RS_RS18295at 299.675 kb on - strand, within RS_RS18295at 299.675 kb on - strand, within RS_RS18295at 299.675 kb on - strand, within RS_RS18295at 299.675 kb on - strand, within RS_RS18295at 299.702 kb on - strand, within RS_RS18295at 299.948 kb on - strand, within RS_RS18295at 299.948 kb on - strand, within RS_RS18295at 300.886 kb on + strand, within RS_RS18300at 300.888 kb on + strand, within RS_RS18300at 300.889 kb on - strand, within RS_RS18300at 301.191 kb on + strand, within RS_RS18300at 301.191 kb on + strand, within RS_RS18300at 301.191 kb on + strand, within RS_RS18300at 301.192 kb on - strand, within RS_RS18300

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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297,891 - RS_RS18290 0.75 -0.1
297,891 - RS_RS18290 0.75 +0.1
297,965 + RS_RS18290 0.78 +0.1
297,965 + RS_RS18290 0.78 -1.3
298,973 - RS_RS18295 0.27 +1.9
298,973 - RS_RS18295 0.27 +0.4
299,221 + RS_RS18295 0.41 +0.3
299,221 + RS_RS18295 0.41 +0.6
299,284 + RS_RS18295 0.44 +0.5
299,284 + RS_RS18295 0.44 +0.9
299,284 + RS_RS18295 0.44 +0.5
299,285 - RS_RS18295 0.44 +0.2
299,288 - RS_RS18295 0.44 +0.0
299,288 - RS_RS18295 0.44 -0.2
299,288 - RS_RS18295 0.44 +0.3
299,545 + RS_RS18295 0.58 +1.1
299,545 + RS_RS18295 0.58 +0.3
299,545 + RS_RS18295 0.58 +0.3
299,546 - RS_RS18295 0.58 +0.3
299,674 + RS_RS18295 0.65 +0.5
299,675 - RS_RS18295 0.65 +1.9
299,675 - RS_RS18295 0.65 -0.9
299,675 - RS_RS18295 0.65 +0.3
299,675 - RS_RS18295 0.65 +0.9
299,675 - RS_RS18295 0.65 -0.5
299,702 - RS_RS18295 0.66 -0.4
299,948 - RS_RS18295 0.80 -0.9
299,948 - RS_RS18295 0.80 -0.1
300,886 + RS_RS18300 0.25 +0.2
300,888 + RS_RS18300 0.25 +0.3
300,889 - RS_RS18300 0.25 +0.3
301,191 + RS_RS18300 0.38 -0.1
301,191 + RS_RS18300 0.38 +0.3
301,191 + RS_RS18300 0.38 +1.9
301,192 - RS_RS18300 0.38 +0.8

Or see this region's nucleotide sequence