Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS08250

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS08245 and RS_RS08250 are separated by 95 nucleotidesRS_RS08250 and RS_RS08255 are separated by 4 nucleotidesRS_RS08255 and RS_RS08260 are separated by 42 nucleotides RS_RS08245: RS_RS08245 - 30S ribosomal protein S12 methylthiotransferase RimO, at 1,757,469 to 1,758,830 _RS08245 RS_RS08250: RS_RS08250 - acetyl-CoA C-acyltransferase, at 1,758,926 to 1,760,110 _RS08250 RS_RS08255: RS_RS08255 - hypothetical protein, at 1,760,115 to 1,760,822 _RS08255 RS_RS08260: RS_RS08260 - cystathionine beta-lyase, at 1,760,865 to 1,762,079 _RS08260 Position (kb) 1758 1759 1760 1761Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1758.205 kb on - strand, within RS_RS08245at 1758.210 kb on + strand, within RS_RS08245at 1758.271 kb on - strand, within RS_RS08245at 1758.271 kb on - strand, within RS_RS08245at 1758.502 kb on - strand, within RS_RS08245at 1758.726 kb on + strandat 1758.884 kb on + strandat 1758.884 kb on + strandat 1758.886 kb on + strandat 1759.121 kb on + strand, within RS_RS08250at 1759.122 kb on - strand, within RS_RS08250at 1759.122 kb on - strand, within RS_RS08250at 1759.122 kb on - strand, within RS_RS08250at 1760.383 kb on - strand, within RS_RS08255at 1760.473 kb on - strand, within RS_RS08255at 1760.473 kb on - strand, within RS_RS08255at 1760.821 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,758,205 - RS_RS08245 0.54 +0.2
1,758,210 + RS_RS08245 0.54 -0.6
1,758,271 - RS_RS08245 0.59 +1.5
1,758,271 - RS_RS08245 0.59 +0.1
1,758,502 - RS_RS08245 0.76 +1.8
1,758,726 + +0.6
1,758,884 + -0.8
1,758,884 + -3.1
1,758,886 + -0.2
1,759,121 + RS_RS08250 0.16 -2.2
1,759,122 - RS_RS08250 0.17 +0.5
1,759,122 - RS_RS08250 0.17 +0.9
1,759,122 - RS_RS08250 0.17 +0.1
1,760,383 - RS_RS08255 0.38 +0.5
1,760,473 - RS_RS08255 0.51 +3.1
1,760,473 - RS_RS08255 0.51 +1.5
1,760,821 - +0.2

Or see this region's nucleotide sequence