Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS05315

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS05305 and RS_RS05310 are separated by 68 nucleotidesRS_RS05310 and RS_RS05315 are separated by 137 nucleotidesRS_RS05315 and RS_RS05320 are separated by 54 nucleotidesRS_RS05320 and RS_RS05325 are separated by 91 nucleotidesRS_RS05325 and RS_RS25415 overlap by 34 nucleotides RS_RS05305: RS_RS05305 - excinuclease ABC subunit UvrC, at 1,123,446 to 1,125,455 _RS05305 RS_RS05310: RS_RS05310 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,125,524 to 1,126,099 _RS05310 RS_RS05315: RS_RS05315 - tRNA-Gly, at 1,126,237 to 1,126,312 _RS05315 RS_RS05320: RS_RS05320 - tRNA-Gly, at 1,126,367 to 1,126,442 _RS05320 RS_RS05325: RS_RS05325 - tRNA-Cys, at 1,126,534 to 1,126,607 _RS05325 RS_RS25415: RS_RS25415 - hypothetical protein, at 1,126,574 to 1,126,759 _RS25415 Position (kb) 1126 1127Strain fitness (log2 ratio) -2 -1 0 1at 1125.519 kb on + strandat 1126.476 kb on + strandat 1126.967 kb on + strandat 1127.081 kb on - strandat 1127.163 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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1,125,519 + -1.4
1,126,476 + -1.8
1,126,967 + +1.2
1,127,081 - -1.2
1,127,163 + -0.6

Or see this region's nucleotide sequence