Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03590

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03580 and RS_RS03585 are separated by 24 nucleotidesRS_RS03585 and RS_RS03590 are separated by 85 nucleotidesRS_RS03590 and RS_RS03595 are separated by 103 nucleotidesRS_RS03595 and RS_RS03600 are separated by 8 nucleotides RS_RS03580: RS_RS03580 - N utilization substance protein B, at 759,544 to 760,011 _RS03580 RS_RS03585: RS_RS03585 - 6,7-dimethyl-8-ribityllumazine synthase, at 760,036 to 760,530 _RS03585 RS_RS03590: RS_RS03590 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 760,616 to 761,746 _RS03590 RS_RS03595: RS_RS03595 - riboflavin synthase, at 761,850 to 762,503 _RS03595 RS_RS03600: RS_RS03600 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 762,512 to 763,624 _RS03600 Position (kb) 760 761 762Strain fitness (log2 ratio) -2 -1 0 1at 761.821 kb on + strandat 761.821 kb on + strandat 761.822 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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761,821 + -1.9
761,821 + +0.1
761,822 - -0.3

Or see this region's nucleotide sequence