Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS19225

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS19220 and RS_RS26070 are separated by 111 nucleotidesRS_RS26070 and RS_RS19225 are separated by 183 nucleotidesRS_RS19225 and RS_RS19230 are separated by 27 nucleotides RS_RS19220: RS_RS19220 - hypothetical protein, at 541,770 to 542,045 _RS19220 RS_RS26070: RS_RS26070 - hypothetical protein, at 542,157 to 542,321 _RS26070 RS_RS19225: RS_RS19225 - MFS transporter, at 542,505 to 543,704 _RS19225 RS_RS19230: RS_RS19230 - alcohol dehydrogenase, at 543,732 to 544,763 _RS19230 Position (kb) 542 543 544Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 541.513 kb on + strandat 541.831 kb on + strand, within RS_RS19220at 541.831 kb on + strand, within RS_RS19220at 541.921 kb on + strand, within RS_RS19220at 541.921 kb on + strand, within RS_RS19220at 541.921 kb on + strand, within RS_RS19220at 541.922 kb on - strand, within RS_RS19220at 541.922 kb on - strand, within RS_RS19220at 541.922 kb on - strand, within RS_RS19220at 541.999 kb on - strand, within RS_RS19220at 542.060 kb on + strandat 542.060 kb on + strandat 542.061 kb on - strandat 542.062 kb on + strandat 542.080 kb on - strandat 542.306 kb on + strandat 542.433 kb on + strandat 542.433 kb on + strandat 542.434 kb on - strandat 542.486 kb on - strandat 542.486 kb on - strandat 542.720 kb on + strand, within RS_RS19225at 542.721 kb on - strand, within RS_RS19225at 542.721 kb on - strand, within RS_RS19225at 542.927 kb on - strand, within RS_RS19225at 543.034 kb on + strand, within RS_RS19225at 543.034 kb on + strand, within RS_RS19225at 543.034 kb on + strand, within RS_RS19225at 543.035 kb on - strand, within RS_RS19225at 543.035 kb on - strand, within RS_RS19225at 543.108 kb on + strand, within RS_RS19225at 543.109 kb on - strand, within RS_RS19225at 543.196 kb on + strand, within RS_RS19225at 543.196 kb on + strand, within RS_RS19225at 543.196 kb on + strand, within RS_RS19225at 543.196 kb on + strand, within RS_RS19225at 543.197 kb on - strand, within RS_RS19225at 543.197 kb on - strand, within RS_RS19225at 543.208 kb on + strand, within RS_RS19225at 543.208 kb on + strand, within RS_RS19225at 543.242 kb on + strand, within RS_RS19225at 543.402 kb on + strand, within RS_RS19225at 543.403 kb on - strand, within RS_RS19225at 543.497 kb on - strand, within RS_RS19225at 543.564 kb on + strand, within RS_RS19225at 543.597 kb on - strandat 543.597 kb on - strandat 543.622 kb on + strandat 543.623 kb on - strandat 543.793 kb on + strandat 543.794 kb on - strandat 543.927 kb on + strand, within RS_RS19230at 543.928 kb on - strand, within RS_RS19230at 544.113 kb on - strand, within RS_RS19230at 544.114 kb on + strand, within RS_RS19230at 544.114 kb on + strand, within RS_RS19230at 544.114 kb on + strand, within RS_RS19230at 544.114 kb on + strand, within RS_RS19230at 544.114 kb on + strand, within RS_RS19230at 544.114 kb on + strand, within RS_RS19230at 544.114 kb on + strand, within RS_RS19230at 544.114 kb on + strand, within RS_RS19230at 544.115 kb on - strand, within RS_RS19230at 544.115 kb on - strand, within RS_RS19230at 544.115 kb on - strand, within RS_RS19230at 544.115 kb on - strand, within RS_RS19230at 544.115 kb on - strand, within RS_RS19230at 544.115 kb on - strand, within RS_RS19230at 544.115 kb on - strand, within RS_RS19230at 544.115 kb on - strand, within RS_RS19230at 544.115 kb on - strand, within RS_RS19230at 544.115 kb on - strand, within RS_RS19230at 544.115 kb on - strand, within RS_RS19230at 544.202 kb on - strand, within RS_RS19230at 544.334 kb on + strand, within RS_RS19230at 544.334 kb on + strand, within RS_RS19230at 544.334 kb on + strand, within RS_RS19230at 544.335 kb on - strand, within RS_RS19230at 544.335 kb on - strand, within RS_RS19230at 544.500 kb on + strand, within RS_RS19230at 544.500 kb on + strand, within RS_RS19230at 544.500 kb on + strand, within RS_RS19230at 544.501 kb on - strand, within RS_RS19230at 544.501 kb on - strand, within RS_RS19230at 544.501 kb on - strand, within RS_RS19230at 544.589 kb on - strand, within RS_RS19230

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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541,513 + -1.0
541,831 + RS_RS19220 0.22 -0.4
541,831 + RS_RS19220 0.22 -2.3
541,921 + RS_RS19220 0.55 -0.4
541,921 + RS_RS19220 0.55 +0.3
541,921 + RS_RS19220 0.55 -2.2
541,922 - RS_RS19220 0.55 -0.4
541,922 - RS_RS19220 0.55 +1.6
541,922 - RS_RS19220 0.55 -1.6
541,999 - RS_RS19220 0.83 +0.0
542,060 + +1.6
542,060 + -1.4
542,061 - +1.2
542,062 + +0.0
542,080 - +0.7
542,306 + -1.2
542,433 + +0.3
542,433 + -1.0
542,434 - +2.6
542,486 - +0.4
542,486 - +0.4
542,720 + RS_RS19225 0.18 -1.2
542,721 - RS_RS19225 0.18 -3.5
542,721 - RS_RS19225 0.18 -0.7
542,927 - RS_RS19225 0.35 -0.5
543,034 + RS_RS19225 0.44 +1.2
543,034 + RS_RS19225 0.44 -2.2
543,034 + RS_RS19225 0.44 -1.2
543,035 - RS_RS19225 0.44 -0.4
543,035 - RS_RS19225 0.44 +0.0
543,108 + RS_RS19225 0.50 -0.5
543,109 - RS_RS19225 0.50 +0.4
543,196 + RS_RS19225 0.58 -0.8
543,196 + RS_RS19225 0.58 -1.7
543,196 + RS_RS19225 0.58 -2.4
543,196 + RS_RS19225 0.58 +0.4
543,197 - RS_RS19225 0.58 -1.4
543,197 - RS_RS19225 0.58 +1.2
543,208 + RS_RS19225 0.59 -1.0
543,208 + RS_RS19225 0.59 -0.1
543,242 + RS_RS19225 0.61 +0.6
543,402 + RS_RS19225 0.75 -1.1
543,403 - RS_RS19225 0.75 +0.0
543,497 - RS_RS19225 0.83 -1.2
543,564 + RS_RS19225 0.88 -1.2
543,597 - -0.4
543,597 - -1.2
543,622 + -0.2
543,623 - +1.6
543,793 + +0.0
543,794 - -1.2
543,927 + RS_RS19230 0.19 +0.7
543,928 - RS_RS19230 0.19 +0.8
544,113 - RS_RS19230 0.37 -3.2
544,114 + RS_RS19230 0.37 -2.0
544,114 + RS_RS19230 0.37 -0.7
544,114 + RS_RS19230 0.37 -0.7
544,114 + RS_RS19230 0.37 -1.0
544,114 + RS_RS19230 0.37 +0.0
544,114 + RS_RS19230 0.37 +0.0
544,114 + RS_RS19230 0.37 +0.6
544,114 + RS_RS19230 0.37 -1.0
544,115 - RS_RS19230 0.37 +0.8
544,115 - RS_RS19230 0.37 +0.4
544,115 - RS_RS19230 0.37 -1.0
544,115 - RS_RS19230 0.37 -0.2
544,115 - RS_RS19230 0.37 -2.5
544,115 - RS_RS19230 0.37 +0.0
544,115 - RS_RS19230 0.37 +0.6
544,115 - RS_RS19230 0.37 -0.7
544,115 - RS_RS19230 0.37 -0.6
544,115 - RS_RS19230 0.37 +0.6
544,115 - RS_RS19230 0.37 +1.6
544,202 - RS_RS19230 0.46 +0.1
544,334 + RS_RS19230 0.58 +0.4
544,334 + RS_RS19230 0.58 +0.6
544,334 + RS_RS19230 0.58 -0.4
544,335 - RS_RS19230 0.58 +0.6
544,335 - RS_RS19230 0.58 -1.2
544,500 + RS_RS19230 0.74 +0.0
544,500 + RS_RS19230 0.74 +1.1
544,500 + RS_RS19230 0.74 +1.6
544,501 - RS_RS19230 0.75 +0.0
544,501 - RS_RS19230 0.75 -1.4
544,501 - RS_RS19230 0.75 +0.2
544,589 - RS_RS19230 0.83 +1.6

Or see this region's nucleotide sequence