Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06550

Experiment: L-Aspartic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRS_RS06545 and RS_RS06550 are separated by 115 nucleotidesRS_RS06550 and RS_RS06555 are separated by 93 nucleotidesRS_RS06555 and RS_RS06560 are separated by 65 nucleotidesRS_RS06560 and RS_RS06565 are separated by 3 nucleotides RS_RS06545: RS_RS06545 - ferredoxin--NADP reductase, at 1,392,131 to 1,392,907 _RS06545 RS_RS06550: RS_RS06550 - asparaginase, at 1,393,023 to 1,394,018 _RS06550 RS_RS06555: RS_RS06555 - 30S ribosomal protein S6, at 1,394,112 to 1,394,480 _RS06555 RS_RS06560: RS_RS06560 - primosomal replication protein N, at 1,394,546 to 1,394,872 _RS06560 RS_RS06565: RS_RS06565 - 30S ribosomal protein S18, at 1,394,876 to 1,395,163 _RS06565 Position (kb) 1393 1394 1395Strain fitness (log2 ratio) -1 0 1at 1392.034 kb on + strandat 1392.035 kb on - strandat 1392.905 kb on + strandat 1392.985 kb on - strandat 1393.539 kb on + strand, within RS_RS06550at 1393.539 kb on + strand, within RS_RS06550at 1393.699 kb on - strand, within RS_RS06550at 1393.699 kb on - strand, within RS_RS06550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
remove
1,392,034 + +0.2
1,392,035 - +0.5
1,392,905 + +0.7
1,392,985 - +0.0
1,393,539 + RS_RS06550 0.52 -0.5
1,393,539 + RS_RS06550 0.52 -1.5
1,393,699 - RS_RS06550 0.68 -0.7
1,393,699 - RS_RS06550 0.68 +0.5

Or see this region's nucleotide sequence