Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS05990

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS05985 and RS_RS05990 are separated by 78 nucleotidesRS_RS05990 and RS_RS05995 are separated by 32 nucleotides RS_RS05985: RS_RS05985 - carbohydrate porin, at 1,263,160 to 1,264,665 _RS05985 RS_RS05990: RS_RS05990 - GntR family transcriptional regulator, at 1,264,744 to 1,265,664 _RS05990 RS_RS05995: RS_RS05995 - CoA transferase, at 1,265,697 to 1,266,905 _RS05995 Position (kb) 1264 1265 1266Strain fitness (log2 ratio) -2 -1 0 1at 1263.761 kb on + strand, within RS_RS05985at 1263.762 kb on - strand, within RS_RS05985at 1263.771 kb on - strand, within RS_RS05985at 1263.873 kb on + strand, within RS_RS05985at 1263.873 kb on + strand, within RS_RS05985at 1263.874 kb on - strand, within RS_RS05985at 1263.874 kb on - strand, within RS_RS05985at 1263.960 kb on - strand, within RS_RS05985at 1264.124 kb on + strand, within RS_RS05985at 1264.149 kb on - strand, within RS_RS05985at 1264.149 kb on - strand, within RS_RS05985at 1264.608 kb on - strandat 1266.021 kb on + strand, within RS_RS05995at 1266.022 kb on - strand, within RS_RS05995at 1266.022 kb on - strand, within RS_RS05995at 1266.148 kb on - strand, within RS_RS05995at 1266.250 kb on - strand, within RS_RS05995at 1266.250 kb on - strand, within RS_RS05995at 1266.342 kb on + strand, within RS_RS05995at 1266.342 kb on + strand, within RS_RS05995at 1266.412 kb on - strand, within RS_RS05995at 1266.433 kb on - strand, within RS_RS05995at 1266.652 kb on - strand, within RS_RS05995

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,263,761 + RS_RS05985 0.40 -0.5
1,263,762 - RS_RS05985 0.40 +0.9
1,263,771 - RS_RS05985 0.41 -1.1
1,263,873 + RS_RS05985 0.47 +0.5
1,263,873 + RS_RS05985 0.47 -0.5
1,263,874 - RS_RS05985 0.47 -2.2
1,263,874 - RS_RS05985 0.47 -1.5
1,263,960 - RS_RS05985 0.53 -1.4
1,264,124 + RS_RS05985 0.64 -2.7
1,264,149 - RS_RS05985 0.66 +0.9
1,264,149 - RS_RS05985 0.66 +0.5
1,264,608 - -0.9
1,266,021 + RS_RS05995 0.27 +0.0
1,266,022 - RS_RS05995 0.27 -1.5
1,266,022 - RS_RS05995 0.27 +1.5
1,266,148 - RS_RS05995 0.37 +1.0
1,266,250 - RS_RS05995 0.46 +0.8
1,266,250 - RS_RS05995 0.46 -0.9
1,266,342 + RS_RS05995 0.53 +0.4
1,266,342 + RS_RS05995 0.53 +0.1
1,266,412 - RS_RS05995 0.59 +0.6
1,266,433 - RS_RS05995 0.61 +1.1
1,266,652 - RS_RS05995 0.79 +0.5

Or see this region's nucleotide sequence