Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS05925

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS05920 and RS_RS05925 are separated by 158 nucleotidesRS_RS05925 and RS_RS05930 are separated by 192 nucleotidesRS_RS05930 and RS_RS05935 overlap by 4 nucleotides RS_RS05920: RS_RS05920 - glycosyltransferase family 39 protein, at 1,243,885 to 1,245,681 _RS05920 RS_RS05925: RS_RS05925 - 50S ribosomal protein L31 type B, at 1,245,840 to 1,246,103 _RS05925 RS_RS05930: RS_RS05930 - hypothetical protein, at 1,246,296 to 1,246,859 _RS05930 RS_RS05935: RS_RS05935 - membrane protein, at 1,246,856 to 1,247,722 _RS05935 Position (kb) 1245 1246 1247Strain fitness (log2 ratio) -1 0 1at 1246.652 kb on - strand, within RS_RS05930at 1246.652 kb on - strand, within RS_RS05930at 1246.920 kb on + strandat 1246.941 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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1,246,652 - RS_RS05930 0.63 +1.5
1,246,652 - RS_RS05930 0.63 -1.4
1,246,920 + -0.9
1,246,941 + +0.1

Or see this region's nucleotide sequence