Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03825

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03815 and RS_RS03820 are separated by 10 nucleotidesRS_RS03820 and RS_RS03825 are separated by 49 nucleotidesRS_RS03825 and RS_RS03830 are separated by 34 nucleotidesRS_RS03830 and RS_RS03835 are separated by 159 nucleotides RS_RS03815: RS_RS03815 - IclR family transcriptional regulator, at 800,954 to 801,775 _RS03815 RS_RS03820: RS_RS03820 - tryptophan 2,3-dioxygenase, at 801,786 to 802,622 _RS03820 RS_RS03825: RS_RS03825 - kynureninase, at 802,672 to 803,925 _RS03825 RS_RS03830: RS_RS03830 - kynurenine formamidase, at 803,960 to 804,589 _RS03830 RS_RS03835: RS_RS03835 - Lrp/AsnC family transcriptional regulator, at 804,749 to 805,279 _RS03835 Position (kb) 802 803 804Strain fitness (log2 ratio) -3 -2 -1 0 1at 801.774 kb on - strandat 801.851 kb on - strandat 801.976 kb on + strand, within RS_RS03820at 801.977 kb on - strand, within RS_RS03820at 801.977 kb on - strand, within RS_RS03820at 802.007 kb on - strand, within RS_RS03820at 802.042 kb on + strand, within RS_RS03820at 802.042 kb on + strand, within RS_RS03820at 802.111 kb on + strand, within RS_RS03820at 802.112 kb on - strand, within RS_RS03820at 802.168 kb on + strand, within RS_RS03820at 802.549 kb on + strandat 802.558 kb on + strandat 802.558 kb on + strandat 802.558 kb on + strandat 802.686 kb on + strandat 802.686 kb on + strandat 802.686 kb on + strandat 802.687 kb on - strandat 802.687 kb on - strandat 802.883 kb on + strand, within RS_RS03825at 802.883 kb on + strand, within RS_RS03825at 802.884 kb on - strand, within RS_RS03825at 803.117 kb on + strand, within RS_RS03825at 803.118 kb on - strand, within RS_RS03825at 803.118 kb on - strand, within RS_RS03825at 803.240 kb on + strand, within RS_RS03825at 803.241 kb on - strand, within RS_RS03825at 803.241 kb on - strand, within RS_RS03825at 803.246 kb on + strand, within RS_RS03825at 803.246 kb on + strand, within RS_RS03825at 803.247 kb on - strand, within RS_RS03825at 803.247 kb on - strand, within RS_RS03825at 803.378 kb on + strand, within RS_RS03825at 803.378 kb on + strand, within RS_RS03825at 803.378 kb on + strand, within RS_RS03825at 803.378 kb on + strand, within RS_RS03825at 803.379 kb on - strand, within RS_RS03825at 803.397 kb on - strand, within RS_RS03825at 803.523 kb on - strand, within RS_RS03825at 803.523 kb on - strand, within RS_RS03825at 803.831 kb on + strandat 803.831 kb on + strandat 804.039 kb on + strand, within RS_RS03830at 804.258 kb on + strand, within RS_RS03830at 804.258 kb on + strand, within RS_RS03830at 804.367 kb on - strand, within RS_RS03830at 804.411 kb on + strand, within RS_RS03830at 804.581 kb on - strandat 804.581 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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801,774 - -0.5
801,851 - -2.8
801,976 + RS_RS03820 0.23 -1.0
801,977 - RS_RS03820 0.23 +1.6
801,977 - RS_RS03820 0.23 -0.6
802,007 - RS_RS03820 0.26 +0.3
802,042 + RS_RS03820 0.31 -1.7
802,042 + RS_RS03820 0.31 +1.6
802,111 + RS_RS03820 0.39 -0.7
802,112 - RS_RS03820 0.39 +0.4
802,168 + RS_RS03820 0.46 +0.0
802,549 + -1.2
802,558 + -1.7
802,558 + +1.6
802,558 + +0.4
802,686 + -0.4
802,686 + +0.0
802,686 + +0.4
802,687 - -0.3
802,687 - -1.0
802,883 + RS_RS03825 0.17 +0.2
802,883 + RS_RS03825 0.17 +0.0
802,884 - RS_RS03825 0.17 -0.8
803,117 + RS_RS03825 0.35 +0.1
803,118 - RS_RS03825 0.36 -1.2
803,118 - RS_RS03825 0.36 +0.4
803,240 + RS_RS03825 0.45 +0.1
803,241 - RS_RS03825 0.45 +0.2
803,241 - RS_RS03825 0.45 -1.0
803,246 + RS_RS03825 0.46 -1.8
803,246 + RS_RS03825 0.46 -0.7
803,247 - RS_RS03825 0.46 +0.3
803,247 - RS_RS03825 0.46 +0.6
803,378 + RS_RS03825 0.56 -0.7
803,378 + RS_RS03825 0.56 +1.6
803,378 + RS_RS03825 0.56 -0.7
803,378 + RS_RS03825 0.56 -0.4
803,379 - RS_RS03825 0.56 +1.2
803,397 - RS_RS03825 0.58 -0.4
803,523 - RS_RS03825 0.68 -0.7
803,523 - RS_RS03825 0.68 -1.9
803,831 + -0.7
803,831 + -0.4
804,039 + RS_RS03830 0.13 -0.4
804,258 + RS_RS03830 0.47 -0.7
804,258 + RS_RS03830 0.47 -0.0
804,367 - RS_RS03830 0.65 -1.5
804,411 + RS_RS03830 0.72 +0.0
804,581 - -0.7
804,581 - -0.4

Or see this region's nucleotide sequence