Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS03095

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS03090 and RS_RS03095 are separated by 205 nucleotidesRS_RS03095 and RS_RS03100 are separated by 529 nucleotides RS_RS03090: RS_RS03090 - hypothetical protein, at 663,206 to 663,718 _RS03090 RS_RS03095: RS_RS03095 - hypothetical protein, at 663,924 to 664,280 _RS03095 RS_RS03100: RS_RS03100 - recombination-associated protein RdgC, at 664,810 to 665,733 _RS03100 Position (kb) 663 664 665Strain fitness (log2 ratio) -3 -2 -1 0 1at 663.035 kb on + strandat 663.036 kb on - strandat 663.309 kb on + strand, within RS_RS03090at 663.310 kb on - strand, within RS_RS03090at 663.310 kb on - strand, within RS_RS03090at 663.496 kb on - strand, within RS_RS03090at 663.510 kb on + strand, within RS_RS03090at 663.564 kb on + strand, within RS_RS03090at 663.564 kb on + strand, within RS_RS03090at 663.565 kb on - strand, within RS_RS03090at 663.926 kb on - strandat 663.941 kb on - strandat 663.953 kb on - strandat 664.099 kb on + strand, within RS_RS03095at 664.099 kb on + strand, within RS_RS03095at 664.262 kb on + strandat 664.399 kb on - strandat 664.408 kb on + strandat 664.453 kb on - strandat 664.480 kb on + strandat 664.480 kb on + strandat 664.614 kb on - strandat 664.619 kb on + strandat 664.619 kb on + strandat 664.620 kb on - strandat 664.620 kb on - strandat 664.803 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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663,035 + +0.4
663,036 - -3.0
663,309 + RS_RS03090 0.20 -0.7
663,310 - RS_RS03090 0.20 -0.8
663,310 - RS_RS03090 0.20 +0.3
663,496 - RS_RS03090 0.57 -0.5
663,510 + RS_RS03090 0.59 -0.8
663,564 + RS_RS03090 0.70 -1.3
663,564 + RS_RS03090 0.70 +1.0
663,565 - RS_RS03090 0.70 -0.8
663,926 - -0.8
663,941 - +0.1
663,953 - +0.4
664,099 + RS_RS03095 0.49 +0.7
664,099 + RS_RS03095 0.49 -0.3
664,262 + -1.3
664,399 - -0.8
664,408 + +0.3
664,453 - +0.5
664,480 + -1.0
664,480 + -0.8
664,614 - -0.8
664,619 + +0.3
664,619 + +1.7
664,620 - -0.2
664,620 - +0.7
664,803 + -1.6

Or see this region's nucleotide sequence