Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS00615

Experiment: L-Aspartic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS00605 and RS_RS00610 are separated by 460 nucleotidesRS_RS00610 and RS_RS00615 overlap by 8 nucleotidesRS_RS00615 and RS_RS00620 are separated by 120 nucleotidesRS_RS00620 and RS_RS00625 are separated by 226 nucleotides RS_RS00605: RS_RS00605 - FAD-binding protein, at 145,024 to 146,748 _RS00605 RS_RS00610: RS_RS00610 - type II toxin-antitoxin system RelE/ParE family toxin, at 147,209 to 147,574 _RS00610 RS_RS00615: RS_RS00615 - transcriptional regulator, at 147,567 to 147,887 _RS00615 RS_RS00620: RS_RS00620 - hypothetical protein, at 148,008 to 148,229 _RS00620 RS_RS00625: RS_RS00625 - YncE family protein, at 148,456 to 149,898 _RS00625 Position (kb) 147 148Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 146.714 kb on + strandat 146.715 kb on - strandat 147.047 kb on + strandat 147.048 kb on - strandat 147.048 kb on - strandat 147.162 kb on + strandat 147.162 kb on + strandat 147.162 kb on + strandat 147.162 kb on + strandat 147.163 kb on - strandat 147.165 kb on - strandat 147.178 kb on - strandat 147.231 kb on + strandat 147.231 kb on + strandat 147.455 kb on - strand, within RS_RS00610at 147.612 kb on - strand, within RS_RS00615at 147.768 kb on + strand, within RS_RS00615at 147.768 kb on + strand, within RS_RS00615at 147.769 kb on - strand, within RS_RS00615at 147.776 kb on + strand, within RS_RS00615at 147.777 kb on - strand, within RS_RS00615at 148.179 kb on + strand, within RS_RS00620at 148.179 kb on + strand, within RS_RS00620at 148.180 kb on - strand, within RS_RS00620at 148.180 kb on - strand, within RS_RS00620at 148.288 kb on + strandat 148.289 kb on - strandat 148.299 kb on + strandat 148.457 kb on + strandat 148.458 kb on - strandat 148.586 kb on + strandat 148.586 kb on + strandat 148.586 kb on + strandat 148.586 kb on + strandat 148.587 kb on - strandat 148.587 kb on - strandat 148.587 kb on - strandat 148.587 kb on - strandat 148.587 kb on - strandat 148.587 kb on - strandat 148.689 kb on - strand, within RS_RS00625at 148.724 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.829 kb on + strand, within RS_RS00625at 148.830 kb on - strand, within RS_RS00625at 148.830 kb on - strand, within RS_RS00625at 148.830 kb on - strand, within RS_RS00625at 148.830 kb on - strand, within RS_RS00625at 148.830 kb on - strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.831 kb on + strand, within RS_RS00625at 148.832 kb on - strand, within RS_RS00625at 148.832 kb on - strand, within RS_RS00625at 148.832 kb on - strand, within RS_RS00625at 148.832 kb on - strand, within RS_RS00625at 148.832 kb on - strand, within RS_RS00625at 148.865 kb on + strand, within RS_RS00625at 148.866 kb on - strand, within RS_RS00625

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Aspartic Acid (C)
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146,714 + +1.8
146,715 - -1.9
147,047 + +0.2
147,048 - +0.3
147,048 - +0.8
147,162 + +0.8
147,162 + -1.5
147,162 + -1.9
147,162 + -0.3
147,163 - +0.4
147,165 - -0.5
147,178 - +1.8
147,231 + -1.1
147,231 + -1.6
147,455 - RS_RS00610 0.67 +0.8
147,612 - RS_RS00615 0.14 +1.0
147,768 + RS_RS00615 0.63 +0.2
147,768 + RS_RS00615 0.63 -1.9
147,769 - RS_RS00615 0.63 +0.8
147,776 + RS_RS00615 0.65 +0.1
147,777 - RS_RS00615 0.65 -0.0
148,179 + RS_RS00620 0.77 -1.8
148,179 + RS_RS00620 0.77 -2.6
148,180 - RS_RS00620 0.77 +0.8
148,180 - RS_RS00620 0.77 +5.0
148,288 + -0.8
148,289 - +0.2
148,299 + -0.3
148,457 + +0.0
148,458 - +0.2
148,586 + -1.0
148,586 + -0.1
148,586 + +0.5
148,586 + -0.2
148,587 - -0.2
148,587 - +1.0
148,587 - +0.4
148,587 - -0.2
148,587 - +0.2
148,587 - +0.2
148,689 - RS_RS00625 0.16 -0.8
148,724 + RS_RS00625 0.19 +0.2
148,829 + RS_RS00625 0.26 -0.8
148,829 + RS_RS00625 0.26 +0.8
148,829 + RS_RS00625 0.26 -1.0
148,829 + RS_RS00625 0.26 -0.8
148,829 + RS_RS00625 0.26 -1.4
148,829 + RS_RS00625 0.26 +0.2
148,829 + RS_RS00625 0.26 -0.8
148,830 - RS_RS00625 0.26 +0.2
148,830 - RS_RS00625 0.26 +0.9
148,830 - RS_RS00625 0.26 -0.1
148,830 - RS_RS00625 0.26 +0.8
148,830 - RS_RS00625 0.26 +1.8
148,831 + RS_RS00625 0.26 -1.5
148,831 + RS_RS00625 0.26 +0.3
148,831 + RS_RS00625 0.26 +1.8
148,831 + RS_RS00625 0.26 +0.4
148,831 + RS_RS00625 0.26 +0.1
148,831 + RS_RS00625 0.26 -0.1
148,831 + RS_RS00625 0.26 -0.2
148,831 + RS_RS00625 0.26 -0.6
148,832 - RS_RS00625 0.26 +0.2
148,832 - RS_RS00625 0.26 -0.4
148,832 - RS_RS00625 0.26 -1.9
148,832 - RS_RS00625 0.26 +0.3
148,832 - RS_RS00625 0.26 +0.1
148,865 + RS_RS00625 0.28 -0.5
148,866 - RS_RS00625 0.28 +0.1

Or see this region's nucleotide sequence