Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS17345

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS17340 and RS_RS17345 are separated by 215 nucleotidesRS_RS17345 and RS_RS17350 are separated by 1 nucleotidesRS_RS17350 and RS_RS17355 overlap by 4 nucleotides RS_RS17340: RS_RS17340 - DUF2076 domain-containing protein, at 35,950 to 36,597 _RS17340 RS_RS17345: RS_RS17345 - bifunctional salicylyl-CoA 5-hydroxylase/oxidoreductase, at 36,813 to 39,170 _RS17345 RS_RS17350: RS_RS17350 - NAD(P)-dependent oxidoreductase, at 39,172 to 39,945 _RS17350 RS_RS17355: RS_RS17355 - MarR family transcriptional regulator, at 39,942 to 40,547 _RS17355 Position (kb) 36 37 38 39 40Strain fitness (log2 ratio) -2 -1 0 1 2at 35.875 kb on + strandat 36.068 kb on + strand, within RS_RS17340at 36.068 kb on + strand, within RS_RS17340at 36.068 kb on + strand, within RS_RS17340at 36.069 kb on - strand, within RS_RS17340at 36.069 kb on - strand, within RS_RS17340at 36.662 kb on - strandat 36.682 kb on + strandat 36.787 kb on - strandat 36.921 kb on + strandat 36.922 kb on - strandat 37.248 kb on + strand, within RS_RS17345at 37.248 kb on + strand, within RS_RS17345at 37.249 kb on - strand, within RS_RS17345at 37.260 kb on + strand, within RS_RS17345at 37.260 kb on + strand, within RS_RS17345at 37.260 kb on + strand, within RS_RS17345at 37.260 kb on + strand, within RS_RS17345at 37.260 kb on + strand, within RS_RS17345at 37.260 kb on + strand, within RS_RS17345at 37.381 kb on - strand, within RS_RS17345at 37.507 kb on - strand, within RS_RS17345at 37.507 kb on - strand, within RS_RS17345at 37.507 kb on - strand, within RS_RS17345at 37.507 kb on - strand, within RS_RS17345at 37.761 kb on + strand, within RS_RS17345at 37.762 kb on - strand, within RS_RS17345at 37.846 kb on - strand, within RS_RS17345at 37.938 kb on + strand, within RS_RS17345at 37.938 kb on + strand, within RS_RS17345at 37.939 kb on - strand, within RS_RS17345at 38.085 kb on + strand, within RS_RS17345at 38.116 kb on - strand, within RS_RS17345at 38.412 kb on + strand, within RS_RS17345at 38.412 kb on + strand, within RS_RS17345at 38.413 kb on - strand, within RS_RS17345at 38.551 kb on - strand, within RS_RS17345at 38.601 kb on + strand, within RS_RS17345at 38.602 kb on - strand, within RS_RS17345at 38.832 kb on + strand, within RS_RS17345at 38.832 kb on + strand, within RS_RS17345at 38.833 kb on - strand, within RS_RS17345at 38.844 kb on + strand, within RS_RS17345at 38.844 kb on + strand, within RS_RS17345at 38.844 kb on + strand, within RS_RS17345at 38.845 kb on - strand, within RS_RS17345at 38.845 kb on - strand, within RS_RS17345at 39.031 kb on - strandat 39.619 kb on + strand, within RS_RS17350at 39.619 kb on + strand, within RS_RS17350at 39.619 kb on + strand, within RS_RS17350at 39.619 kb on + strand, within RS_RS17350at 39.620 kb on - strand, within RS_RS17350at 39.620 kb on - strand, within RS_RS17350at 40.145 kb on + strand, within RS_RS17355at 40.145 kb on + strand, within RS_RS17355at 40.168 kb on - strand, within RS_RS17355at 40.168 kb on - strand, within RS_RS17355

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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35,875 + +0.7
36,068 + RS_RS17340 0.18 -1.6
36,068 + RS_RS17340 0.18 -2.1
36,068 + RS_RS17340 0.18 -0.4
36,069 - RS_RS17340 0.18 -0.9
36,069 - RS_RS17340 0.18 +0.2
36,662 - +0.1
36,682 + +0.2
36,787 - -0.6
36,921 + +0.2
36,922 - +0.8
37,248 + RS_RS17345 0.18 -0.9
37,248 + RS_RS17345 0.18 +1.6
37,249 - RS_RS17345 0.18 -1.4
37,260 + RS_RS17345 0.19 +0.6
37,260 + RS_RS17345 0.19 -0.1
37,260 + RS_RS17345 0.19 +0.6
37,260 + RS_RS17345 0.19 -1.0
37,260 + RS_RS17345 0.19 -0.4
37,260 + RS_RS17345 0.19 -0.8
37,381 - RS_RS17345 0.24 +0.0
37,507 - RS_RS17345 0.29 +0.6
37,507 - RS_RS17345 0.29 +0.8
37,507 - RS_RS17345 0.29 +0.1
37,507 - RS_RS17345 0.29 +0.2
37,761 + RS_RS17345 0.40 +0.1
37,762 - RS_RS17345 0.40 -0.4
37,846 - RS_RS17345 0.44 +2.2
37,938 + RS_RS17345 0.48 -0.5
37,938 + RS_RS17345 0.48 +2.2
37,939 - RS_RS17345 0.48 +1.5
38,085 + RS_RS17345 0.54 +0.4
38,116 - RS_RS17345 0.55 -0.6
38,412 + RS_RS17345 0.68 -2.4
38,412 + RS_RS17345 0.68 +0.2
38,413 - RS_RS17345 0.68 -0.1
38,551 - RS_RS17345 0.74 -0.2
38,601 + RS_RS17345 0.76 +1.0
38,602 - RS_RS17345 0.76 -0.6
38,832 + RS_RS17345 0.86 -0.5
38,832 + RS_RS17345 0.86 +0.6
38,833 - RS_RS17345 0.86 -0.1
38,844 + RS_RS17345 0.86 +0.1
38,844 + RS_RS17345 0.86 +0.1
38,844 + RS_RS17345 0.86 +0.6
38,845 - RS_RS17345 0.86 +0.2
38,845 - RS_RS17345 0.86 +2.2
39,031 - -1.2
39,619 + RS_RS17350 0.58 +0.6
39,619 + RS_RS17350 0.58 -1.5
39,619 + RS_RS17350 0.58 -0.8
39,619 + RS_RS17350 0.58 -0.3
39,620 - RS_RS17350 0.58 +1.2
39,620 - RS_RS17350 0.58 +0.0
40,145 + RS_RS17355 0.33 -1.7
40,145 + RS_RS17355 0.33 -0.1
40,168 - RS_RS17355 0.37 -1.1
40,168 - RS_RS17355 0.37 -0.1

Or see this region's nucleotide sequence