Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS15305

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS15300 and RS_RS15305 are separated by 47 nucleotidesRS_RS15305 and RS_RS15310 overlap by 14 nucleotides RS_RS15300: RS_RS15300 - glycerol-3-phosphate dehydrogenase, at 3,281,615 to 3,283,192 _RS15300 RS_RS15305: RS_RS15305 - ABC transporter ATP-binding protein, at 3,283,240 to 3,284,358 _RS15305 RS_RS15310: RS_RS15310 - ABC transporter ATP-binding protein, at 3,284,345 to 3,285,442 _RS15310 Position (kb) 3283 3284 3285Strain fitness (log2 ratio) -1 0 1at 3282.374 kb on + strand, within RS_RS15300at 3282.375 kb on - strand, within RS_RS15300at 3282.375 kb on - strand, within RS_RS15300at 3282.376 kb on + strand, within RS_RS15300at 3282.377 kb on - strand, within RS_RS15300at 3282.377 kb on - strand, within RS_RS15300at 3282.462 kb on - strand, within RS_RS15300at 3282.509 kb on + strand, within RS_RS15300at 3282.510 kb on - strand, within RS_RS15300at 3282.510 kb on - strand, within RS_RS15300at 3282.510 kb on - strand, within RS_RS15300at 3282.639 kb on - strand, within RS_RS15300at 3282.849 kb on - strand, within RS_RS15300at 3282.849 kb on - strand, within RS_RS15300at 3282.933 kb on - strand, within RS_RS15300at 3283.041 kb on - strandat 3283.098 kb on - strandat 3283.295 kb on - strandat 3283.477 kb on + strand, within RS_RS15305at 3283.513 kb on + strand, within RS_RS15305at 3283.732 kb on + strand, within RS_RS15305at 3283.732 kb on + strand, within RS_RS15305at 3283.802 kb on - strand, within RS_RS15305at 3283.900 kb on + strand, within RS_RS15305at 3283.901 kb on - strand, within RS_RS15305at 3283.901 kb on - strand, within RS_RS15305at 3283.901 kb on - strand, within RS_RS15305at 3283.901 kb on - strand, within RS_RS15305at 3283.901 kb on - strand, within RS_RS15305at 3283.901 kb on - strand, within RS_RS15305at 3284.164 kb on + strand, within RS_RS15305at 3284.504 kb on - strand, within RS_RS15310at 3284.621 kb on + strand, within RS_RS15310at 3284.622 kb on - strand, within RS_RS15310at 3284.622 kb on - strand, within RS_RS15310at 3284.930 kb on + strand, within RS_RS15310at 3284.930 kb on + strand, within RS_RS15310at 3284.930 kb on + strand, within RS_RS15310at 3284.930 kb on + strand, within RS_RS15310at 3284.930 kb on + strand, within RS_RS15310at 3284.931 kb on - strand, within RS_RS15310at 3285.060 kb on - strand, within RS_RS15310

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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3,282,374 + RS_RS15300 0.48 +0.9
3,282,375 - RS_RS15300 0.48 -0.7
3,282,375 - RS_RS15300 0.48 -1.6
3,282,376 + RS_RS15300 0.48 +0.0
3,282,377 - RS_RS15300 0.48 +0.5
3,282,377 - RS_RS15300 0.48 -1.6
3,282,462 - RS_RS15300 0.54 +0.8
3,282,509 + RS_RS15300 0.57 -0.1
3,282,510 - RS_RS15300 0.57 -0.3
3,282,510 - RS_RS15300 0.57 -0.2
3,282,510 - RS_RS15300 0.57 -0.0
3,282,639 - RS_RS15300 0.65 -1.1
3,282,849 - RS_RS15300 0.78 +0.5
3,282,849 - RS_RS15300 0.78 +1.1
3,282,933 - RS_RS15300 0.84 -0.1
3,283,041 - +0.0
3,283,098 - -1.0
3,283,295 - +0.2
3,283,477 + RS_RS15305 0.21 -0.2
3,283,513 + RS_RS15305 0.24 +0.3
3,283,732 + RS_RS15305 0.44 +0.1
3,283,732 + RS_RS15305 0.44 -1.0
3,283,802 - RS_RS15305 0.50 +0.3
3,283,900 + RS_RS15305 0.59 -1.2
3,283,901 - RS_RS15305 0.59 +0.1
3,283,901 - RS_RS15305 0.59 +0.7
3,283,901 - RS_RS15305 0.59 -0.2
3,283,901 - RS_RS15305 0.59 +0.3
3,283,901 - RS_RS15305 0.59 -1.2
3,283,901 - RS_RS15305 0.59 +0.3
3,284,164 + RS_RS15305 0.83 -0.4
3,284,504 - RS_RS15310 0.14 -1.5
3,284,621 + RS_RS15310 0.25 +0.8
3,284,622 - RS_RS15310 0.25 +0.5
3,284,622 - RS_RS15310 0.25 +0.0
3,284,930 + RS_RS15310 0.53 -0.2
3,284,930 + RS_RS15310 0.53 -0.9
3,284,930 + RS_RS15310 0.53 +0.3
3,284,930 + RS_RS15310 0.53 +0.1
3,284,930 + RS_RS15310 0.53 -0.8
3,284,931 - RS_RS15310 0.53 -0.5
3,285,060 - RS_RS15310 0.65 -0.5

Or see this region's nucleotide sequence