Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS08345 and RS_RS25480 are separated by 0 nucleotides RS_RS25480 and RS_RS25175 are separated by 53 nucleotides RS_RS25175 and RS_RS08360 are separated by 1 nucleotides RS_RS08360 and RS_RS08365 overlap by 4 nucleotides
RS_RS08345: RS_RS08345 - site-specific integrase, at 1,781,995 to 1,782,999
_RS08345
RS_RS25480: RS_RS25480 - hypothetical protein, at 1,783,000 to 1,783,308
_RS25480
RS_RS25175: RS_RS25175 - hypothetical protein, at 1,783,362 to 1,784,927
_RS25175
RS_RS08360: RS_RS08360 - hypothetical protein, at 1,784,929 to 1,785,729
_RS08360
RS_RS08365: RS_RS08365 - DUF2016 domain-containing protein, at 1,785,726 to 1,786,511
_RS08365
Position (kb) 1783
1784
1785 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1782.387 kb on - strand, within RS_RS08345 at 1782.653 kb on - strand, within RS_RS08345 at 1782.653 kb on - strand, within RS_RS08345 at 1782.653 kb on - strand, within RS_RS08345 at 1782.653 kb on - strand, within RS_RS08345 at 1782.956 kb on - strand at 1782.958 kb on + strand at 1782.959 kb on - strand at 1782.959 kb on - strand at 1783.027 kb on + strand at 1783.238 kb on - strand, within RS_RS25480 at 1783.280 kb on - strand at 1783.687 kb on + strand, within RS_RS25175 at 1783.688 kb on - strand, within RS_RS25175 at 1783.891 kb on + strand, within RS_RS25175 at 1783.892 kb on + strand, within RS_RS25175 at 1783.892 kb on + strand, within RS_RS25175 at 1784.137 kb on - strand, within RS_RS25175 at 1784.144 kb on - strand, within RS_RS25175 at 1784.887 kb on + strand at 1785.182 kb on + strand, within RS_RS08360 at 1785.210 kb on + strand, within RS_RS08360 at 1785.308 kb on + strand, within RS_RS08360 at 1785.425 kb on + strand, within RS_RS08360 at 1785.498 kb on - strand, within RS_RS08360 at 1785.566 kb on + strand, within RS_RS08360
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 1,782,387 - RS_RS08345 0.39 -1.2 1,782,653 - RS_RS08345 0.65 +0.5 1,782,653 - RS_RS08345 0.65 +1.9 1,782,653 - RS_RS08345 0.65 -0.7 1,782,653 - RS_RS08345 0.65 +1.9 1,782,956 - +0.7 1,782,958 + -0.5 1,782,959 - -0.2 1,782,959 - -0.9 1,783,027 + -0.8 1,783,238 - RS_RS25480 0.77 +1.9 1,783,280 - +0.4 1,783,687 + RS_RS25175 0.21 -0.1 1,783,688 - RS_RS25175 0.21 -2.0 1,783,891 + RS_RS25175 0.34 -0.9 1,783,892 + RS_RS25175 0.34 -2.3 1,783,892 + RS_RS25175 0.34 +0.9 1,784,137 - RS_RS25175 0.49 +0.0 1,784,144 - RS_RS25175 0.50 +0.9 1,784,887 + -0.4 1,785,182 + RS_RS08360 0.32 -1.1 1,785,210 + RS_RS08360 0.35 -0.1 1,785,308 + RS_RS08360 0.47 -0.4 1,785,425 + RS_RS08360 0.62 -0.9 1,785,498 - RS_RS08360 0.71 -0.7 1,785,566 + RS_RS08360 0.80 -1.3
Or see this region's nucleotide sequence