Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS19250

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS19240 and RS_RS19245 are separated by 145 nucleotidesRS_RS19245 and RS_RS19250 are separated by 313 nucleotidesRS_RS19250 and RS_RS26075 overlap by 44 nucleotidesRS_RS26075 and RS_RS19255 are separated by 221 nucleotides RS_RS19240: RS_RS19240 - hypothetical protein, at 546,032 to 546,712 _RS19240 RS_RS19245: RS_RS19245 - hypothetical protein, at 546,858 to 547,139 _RS19245 RS_RS19250: RS_RS19250 - transcriptional regulator GcvA, at 547,453 to 548,367 _RS19250 RS_RS26075: RS_RS26075 - hypothetical protein, at 548,324 to 548,536 _RS26075 RS_RS19255: RS_RS19255 - GntR family transcriptional regulator, at 548,758 to 549,414 _RS19255 Position (kb) 547 548 549Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 546.459 kb on + strand, within RS_RS19240at 546.491 kb on + strand, within RS_RS19240at 546.491 kb on + strand, within RS_RS19240at 546.491 kb on + strand, within RS_RS19240at 546.491 kb on + strand, within RS_RS19240at 546.491 kb on + strand, within RS_RS19240at 546.492 kb on - strand, within RS_RS19240at 546.568 kb on - strand, within RS_RS19240at 546.660 kb on + strandat 546.661 kb on - strandat 546.661 kb on - strandat 546.733 kb on + strandat 546.811 kb on - strandat 546.871 kb on + strandat 546.872 kb on - strandat 546.944 kb on + strand, within RS_RS19245at 546.948 kb on + strand, within RS_RS19245at 546.948 kb on + strand, within RS_RS19245at 546.968 kb on - strand, within RS_RS19245at 546.991 kb on - strand, within RS_RS19245at 546.996 kb on + strand, within RS_RS19245at 546.996 kb on + strand, within RS_RS19245at 546.996 kb on + strand, within RS_RS19245at 546.996 kb on + strand, within RS_RS19245at 546.997 kb on - strand, within RS_RS19245at 547.066 kb on + strand, within RS_RS19245at 547.066 kb on + strand, within RS_RS19245at 547.066 kb on + strand, within RS_RS19245at 547.067 kb on - strand, within RS_RS19245at 547.067 kb on - strand, within RS_RS19245at 547.075 kb on + strand, within RS_RS19245at 547.133 kb on - strandat 547.133 kb on - strandat 547.151 kb on + strandat 547.151 kb on + strandat 547.151 kb on + strandat 547.151 kb on + strandat 547.152 kb on - strandat 547.152 kb on - strandat 547.152 kb on - strandat 547.155 kb on + strandat 547.155 kb on + strandat 547.156 kb on - strandat 547.156 kb on - strandat 547.469 kb on - strandat 547.677 kb on - strand, within RS_RS19250at 547.898 kb on - strand, within RS_RS19250at 547.954 kb on + strand, within RS_RS19250at 547.954 kb on + strand, within RS_RS19250at 547.954 kb on + strand, within RS_RS19250at 547.955 kb on - strand, within RS_RS19250at 547.955 kb on - strand, within RS_RS19250at 547.955 kb on - strand, within RS_RS19250at 547.976 kb on + strand, within RS_RS19250at 547.976 kb on + strand, within RS_RS19250at 547.976 kb on + strand, within RS_RS19250at 547.977 kb on - strand, within RS_RS19250at 547.977 kb on - strand, within RS_RS19250at 548.278 kb on + strandat 548.279 kb on - strandat 548.279 kb on - strandat 548.281 kb on + strandat 548.281 kb on + strandat 548.281 kb on + strandat 548.282 kb on - strandat 548.282 kb on - strandat 548.282 kb on - strandat 548.282 kb on - strandat 548.291 kb on - strandat 548.291 kb on - strandat 548.429 kb on - strand, within RS_RS26075at 548.465 kb on + strandat 548.525 kb on + strandat 548.525 kb on + strandat 548.525 kb on + strandat 548.525 kb on + strandat 548.525 kb on + strandat 548.525 kb on + strandat 548.525 kb on + strandat 548.525 kb on + strandat 548.526 kb on - strandat 548.526 kb on - strandat 548.526 kb on - strandat 548.526 kb on - strandat 548.526 kb on - strandat 548.526 kb on - strandat 548.526 kb on - strandat 548.526 kb on - strandat 548.526 kb on - strandat 548.529 kb on + strandat 548.529 kb on + strandat 548.529 kb on + strandat 548.529 kb on + strandat 548.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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546,459 + RS_RS19240 0.63 +2.0
546,491 + RS_RS19240 0.67 +0.4
546,491 + RS_RS19240 0.67 -1.3
546,491 + RS_RS19240 0.67 +0.0
546,491 + RS_RS19240 0.67 -2.2
546,491 + RS_RS19240 0.67 -0.3
546,492 - RS_RS19240 0.68 +0.4
546,568 - RS_RS19240 0.79 -0.6
546,660 + -1.8
546,661 - -0.8
546,661 - -1.6
546,733 + -0.0
546,811 - -0.0
546,871 + +1.0
546,872 - +0.2
546,944 + RS_RS19245 0.30 -0.6
546,948 + RS_RS19245 0.32 +0.0
546,948 + RS_RS19245 0.32 -1.4
546,968 - RS_RS19245 0.39 +0.1
546,991 - RS_RS19245 0.47 +1.5
546,996 + RS_RS19245 0.49 -1.2
546,996 + RS_RS19245 0.49 -1.0
546,996 + RS_RS19245 0.49 -1.3
546,996 + RS_RS19245 0.49 -1.3
546,997 - RS_RS19245 0.49 -2.4
547,066 + RS_RS19245 0.74 +0.2
547,066 + RS_RS19245 0.74 -0.6
547,066 + RS_RS19245 0.74 -0.7
547,067 - RS_RS19245 0.74 +0.2
547,067 - RS_RS19245 0.74 +0.3
547,075 + RS_RS19245 0.77 +1.6
547,133 - -0.8
547,133 - +0.4
547,151 + -1.4
547,151 + +0.1
547,151 + -2.8
547,151 + -1.6
547,152 - -1.6
547,152 - +0.2
547,152 - -0.6
547,155 + -0.8
547,155 + -0.3
547,156 - -0.8
547,156 - -0.6
547,469 - +0.3
547,677 - RS_RS19250 0.24 +1.4
547,898 - RS_RS19250 0.49 +0.4
547,954 + RS_RS19250 0.55 +0.1
547,954 + RS_RS19250 0.55 +0.4
547,954 + RS_RS19250 0.55 -1.6
547,955 - RS_RS19250 0.55 +2.0
547,955 - RS_RS19250 0.55 -1.4
547,955 - RS_RS19250 0.55 +2.0
547,976 + RS_RS19250 0.57 +0.4
547,976 + RS_RS19250 0.57 -0.2
547,976 + RS_RS19250 0.57 -1.4
547,977 - RS_RS19250 0.57 +0.4
547,977 - RS_RS19250 0.57 -0.4
548,278 + +0.5
548,279 - +0.4
548,279 - -0.6
548,281 + +0.1
548,281 + -0.6
548,281 + +1.0
548,282 - -1.6
548,282 - -0.3
548,282 - -1.1
548,282 - -0.8
548,291 - -0.4
548,291 - +0.4
548,429 - RS_RS26075 0.49 -2.1
548,465 + +1.0
548,525 + -0.8
548,525 + -2.2
548,525 + +1.2
548,525 + +0.3
548,525 + +0.3
548,525 + +0.1
548,525 + -0.2
548,525 + -0.7
548,526 - +1.0
548,526 - +0.4
548,526 - +0.7
548,526 - -0.3
548,526 - +0.0
548,526 - -0.3
548,526 - -1.0
548,526 - -0.0
548,526 - +2.0
548,529 + +1.0
548,529 + -0.6
548,529 + +1.0
548,529 + +1.2
548,530 - -0.3

Or see this region's nucleotide sequence