Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS14415

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS14405 and RS_RS14410 are separated by 72 nucleotidesRS_RS14410 and RS_RS14415 are separated by 0 nucleotidesRS_RS14415 and RS_RS14420 are separated by 136 nucleotidesRS_RS14420 and RS_RS14425 overlap by 4 nucleotides RS_RS14405: RS_RS14405 - murein transglycosylase, at 3,105,124 to 3,106,266 _RS14405 RS_RS14410: RS_RS14410 - hypothetical protein, at 3,106,339 to 3,106,590 _RS14410 RS_RS14415: RS_RS14415 - Co2+/Mg2+ efflux protein ApaG, at 3,106,591 to 3,106,965 _RS14415 RS_RS14420: RS_RS14420 - ribulose-phosphate 3-epimerase, at 3,107,102 to 3,107,830 _RS14420 RS_RS14425: RS_RS14425 - phosphoglycolate phosphatase, at 3,107,827 to 3,108,567 _RS14425 Position (kb) 3106 3107Strain fitness (log2 ratio) -2 -1 0 1at 3105.795 kb on - strand, within RS_RS14405at 3105.809 kb on + strand, within RS_RS14405at 3105.809 kb on + strand, within RS_RS14405at 3105.810 kb on - strand, within RS_RS14405at 3105.851 kb on + strand, within RS_RS14405at 3105.851 kb on + strand, within RS_RS14405at 3105.852 kb on - strand, within RS_RS14405at 3105.852 kb on - strand, within RS_RS14405at 3105.855 kb on - strand, within RS_RS14405at 3106.305 kb on + strandat 3106.305 kb on + strandat 3106.306 kb on - strandat 3106.673 kb on + strand, within RS_RS14415at 3106.674 kb on - strand, within RS_RS14415at 3106.725 kb on - strand, within RS_RS14415at 3106.877 kb on + strand, within RS_RS14415at 3106.889 kb on + strand, within RS_RS14415at 3106.966 kb on - strandat 3106.966 kb on - strandat 3106.966 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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3,105,795 - RS_RS14405 0.59 -0.6
3,105,809 + RS_RS14405 0.60 -0.9
3,105,809 + RS_RS14405 0.60 -1.0
3,105,810 - RS_RS14405 0.60 -0.7
3,105,851 + RS_RS14405 0.64 -1.5
3,105,851 + RS_RS14405 0.64 +1.4
3,105,852 - RS_RS14405 0.64 +0.8
3,105,852 - RS_RS14405 0.64 -0.0
3,105,855 - RS_RS14405 0.64 +1.4
3,106,305 + -2.3
3,106,305 + -0.9
3,106,306 - -0.1
3,106,673 + RS_RS14415 0.22 -0.9
3,106,674 - RS_RS14415 0.22 +0.5
3,106,725 - RS_RS14415 0.36 +0.8
3,106,877 + RS_RS14415 0.76 -1.3
3,106,889 + RS_RS14415 0.79 +0.2
3,106,966 - -0.6
3,106,966 - +0.7
3,106,966 - +0.8

Or see this region's nucleotide sequence