Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS13825 and RS_RS13830 are separated by 58 nucleotides RS_RS13830 and RS_RS13835 are separated by 87 nucleotides RS_RS13835 and RS_RS13840 overlap by 4 nucleotides RS_RS13840 and RS_RS13845 are separated by 467 nucleotides
RS_RS13825: RS_RS13825 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 2,974,718 to 2,975,467
_RS13825
RS_RS13830: RS_RS13830 - DUF937 domain-containing protein, at 2,975,526 to 2,976,089
_RS13830
RS_RS13835: RS_RS13835 - hypothetical protein, at 2,976,177 to 2,976,773
_RS13835
RS_RS13840: RS_RS13840 - ribonuclease N1, at 2,976,770 to 2,977,201
_RS13840
RS_RS13845: RS_RS13845 - NADP-dependent malic enzyme, at 2,977,669 to 2,980,014
_RS13845
Position (kb) 2976
2977 Strain fitness (log2 ratio) -2
-1
0
1
2 at 2975.373 kb on - strand, within RS_RS13825 at 2975.801 kb on + strand, within RS_RS13830 at 2976.817 kb on - strand, within RS_RS13840 at 2976.901 kb on - strand, within RS_RS13840 at 2976.913 kb on - strand, within RS_RS13840 at 2976.946 kb on - strand, within RS_RS13840 at 2977.163 kb on + strand at 2977.435 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 2,975,373 - RS_RS13825 0.87 +0.7 2,975,801 + RS_RS13830 0.49 -2.0 2,976,817 - RS_RS13840 0.11 +0.6 2,976,901 - RS_RS13840 0.30 -0.5 2,976,913 - RS_RS13840 0.33 +0.8 2,976,946 - RS_RS13840 0.41 +0.1 2,977,163 + +2.4 2,977,435 - -0.5
Or see this region's nucleotide sequence